Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-122 441.8 225 100.0
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.3e-115 417.2 224 94.6
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-108 395.6 216 94.0
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-102 374.8 224 87.1
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.4e-90 335.9 224 80.4
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 1.7e-80 303.1 228 72.4
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 5.8e-76 288.1 228 68.9
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 7.6e-76 287.7 234 66.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 1.7e-75 286.6 231 67.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 3.7e-75 285.4 231 68.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 3.3e-71 272.3 232 65.1
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-71 272.3 232 65.1
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-71 271.6 233 65.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 7.3e-71 271.2 235 64.3
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 9.6e-71 270.8 228 65.8
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 4.0e-69 265.4 231 61.0
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.0e-69 265.4 235 63.0
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-69 264.6 234 63.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 8.9e-69 264.2 230 64.3
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 2.0e-68 263.1 230 63.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 3.4e-68 262.3 228 62.7
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 5.8e-68 261.5 229 61.6
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 7.6e-68 261.2 225 63.1
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.9e-68 260.8 229 63.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 9.9e-68 260.8 237 62.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 1.3e-67 260.4 228 64.0
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 1.3e-67 260.4 223 64.1
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 1.3e-67 260.4 223 64.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.3e-67 260.4 223 64.1
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.7e-67 260.0 226 62.4
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 3.8e-67 258.8 228 61.8
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 3.8e-67 258.8 229 60.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 3.8e-67 258.8 227 61.2
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 6.4e-67 258.1 229 60.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 8.4e-67 257.7 229 61.1
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 1.1e-66 257.3 233 60.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 1.4e-66 256.9 227 63.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.9e-66 256.5 235 61.7
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 4.2e-66 255.4 227 63.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 1.6e-65 253.4 237 60.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 1.6e-65 253.4 233 59.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.6e-65 253.4 227 60.4
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 2.7e-65 252.7 233 59.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.7e-65 252.7 228 60.5
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 4.6e-65 251.9 237 59.9
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 4.6e-65 251.9 226 58.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 6.0e-65 251.5 237 59.1
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 7.8e-65 251.1 237 57.8
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 7.8e-65 251.1 224 60.7
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 1.7e-64 250.0 228 61.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 1.7e-64 250.0 230 60.0
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 3.0e-64 249.2 237 59.1
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 3.0e-64 249.2 232 59.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 5.1e-64 248.4 234 60.7
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 5.1e-64 248.4 234 60.7
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 6.6e-64 248.1 231 58.4
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 6.6e-64 248.1 231 61.5
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 1.1e-63 247.3 239 57.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 1.5e-63 246.9 233 59.7
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 4.3e-63 245.4 238 58.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 4.3e-63 245.4 230 57.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 5.6e-63 245.0 241 58.5
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 9.6e-63 244.2 236 59.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 1.6e-62 243.4 228 57.0
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 2.1e-62 243.0 237 57.4
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 1.8e-61 240.0 240 57.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 2.4e-61 239.6 230 60.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 6.9e-61 238.0 241 56.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 9.0e-61 237.7 238 58.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 9.0e-61 237.7 229 55.5
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 1.2e-60 237.3 223 57.4
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.2e-60 237.3 225 57.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.2e-60 237.3 230 60.0
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 1.5e-60 236.9 245 55.9
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 1.5e-60 236.9 245 55.9
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 2.0e-60 236.5 227 56.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 2.6e-60 236.1 227 57.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 5.8e-60 235.0 244 58.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 5.8e-60 235.0 244 58.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 5.8e-60 235.0 222 56.3
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 5.8e-60 235.0 225 56.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 2.2e-59 233.0 237 58.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.4e-59 231.5 201 63.2
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 1.1e-58 230.7 240 56.2
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 1.4e-58 230.3 231 58.0
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.4e-58 230.3 225 55.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.2e-58 229.2 242 55.8
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 3.2e-58 229.2 234 56.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 5.4e-58 228.4 240 55.4
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 9.3e-58 227.6 244 55.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 9.3e-58 227.6 243 54.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 9.3e-58 227.6 235 57.0
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 2.1e-57 226.5 236 55.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 2.7e-57 226.1 240 55.8
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-57 226.1 234 53.4
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-57 225.7 234 53.0
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.6e-57 225.3 229 52.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 6.0e-57 224.9 241 56.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 7.9e-57 224.6 224 55.8
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.0e-56 224.2 246 53.3
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 1.0e-56 224.2 246 53.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 1.0e-56 224.2 241 55.6
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 1.7e-56 223.4 241 55.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.7e-56 223.4 232 57.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 3.9e-56 222.2 241 56.0
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 6.6e-56 221.5 242 55.8
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 1.5e-55 220.3 235 54.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.5e-55 219.5 229 52.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.5e-55 219.5 229 52.0
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 5.6e-55 218.4 240 54.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 4.8e-54 215.3 245 55.1
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.0e-52 209.9 226 54.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.6e-52 209.5 227 55.1
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 2.6e-52 209.5 227 53.7
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 3.2e-50 202.6 219 51.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.4e-42 177.2 190 57.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 5.1e-40 168.7 224 44.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.5e-39 166.4 140 61.4
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 2.1e-38 163.3 165 52.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 4.1e-37 159.1 228 43.0
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.5e-36 157.1 221 41.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.0e-36 156.8 228 43.0
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-35 153.7 228 41.7
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-33 146.7 223 44.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 7.4e-31 138.3 231 37.7
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 2.8e-30 136.3 225 39.1
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 4.1e-29 132.5 227 38.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 2.0e-28 130.2 231 39.4
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.1e-26 124.4 208 37.0
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-26 123.2 226 40.7
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-25 120.6 231 35.1
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 7.9e-25 118.2 122 52.5
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.4e-21 106.7 91 62.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.2e-20 104.4 228 32.5
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.0e-20 103.6 230 37.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 4.5e-20 102.4 230 35.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.2e-14 81.6 237 32.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.0e-11 74.7 68 61.8
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.1e-10 71.2 188 33.5
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 3.6e-09 66.2 63 54.0
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.8e-08 63.9 213 27.2


User provided reference genes

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