Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 5.2e-87 324.3 162 100.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.4e-84 315.5 162 97.5
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 5.1e-74 281.2 161 86.3
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 2.5e-65 252.3 165 75.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 5.3e-63 244.6 164 73.2
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.1e-57 226.9 159 67.9
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.1e-57 226.9 162 67.3
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.5e-57 226.5 164 67.1
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 4.3e-57 224.9 159 67.3
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.6e-56 223.0 162 66.7
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 2.4e-55 219.2 162 64.2
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 4.5e-54 214.9 158 65.2
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 4.5e-54 214.9 158 64.6
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.3e-53 213.4 159 60.4
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 2.2e-53 212.6 157 63.1
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 2.9e-53 212.2 150 66.7
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 2.9e-53 212.2 160 64.4
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 5.0e-53 211.5 156 64.1
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 6.5e-53 211.1 155 63.2
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.1e-52 210.3 162 62.3
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.1e-52 210.3 160 60.6
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 7.2e-52 207.6 160 62.5
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 9.3e-52 207.2 157 66.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.6e-51 206.5 165 63.0
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.6e-51 206.5 152 67.1
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.1e-51 206.1 159 62.3
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 2.1e-51 206.1 152 63.2
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 6.1e-51 204.5 162 63.6
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 6.1e-51 204.5 158 62.7
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 7.9e-51 204.1 162 60.5
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 1.3e-50 203.4 161 62.7
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 1.8e-50 203.0 163 59.5
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.3e-50 202.6 155 61.9
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 2.3e-50 202.6 151 66.2
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 3.0e-50 202.2 154 63.0
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 3.9e-50 201.8 151 62.3
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 5.1e-50 201.4 154 61.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.1e-50 201.4 150 60.7
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 6.7e-50 201.1 153 62.1
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 8.7e-50 200.7 157 60.5
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 8.7e-50 200.7 159 60.4
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 2.5e-49 199.1 158 62.0
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 3.3e-49 198.7 165 59.4
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 4.3e-49 198.4 152 65.1
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 4.8e-48 194.9 159 57.2
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.4e-47 193.4 159 57.9
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.4e-47 193.4 155 58.7
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 4.1e-47 191.8 156 63.5
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 4.1e-47 191.8 155 58.7
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 4.1e-47 191.8 159 57.9
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 6.9e-47 191.0 159 57.9
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 3.4e-46 188.7 156 58.3
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 4.5e-46 188.3 162 58.6
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 1.0e-45 187.2 156 58.3
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 1.0e-45 187.2 154 59.1
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 1.3e-45 186.8 159 57.2
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.3e-45 186.8 155 58.1
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.3e-45 186.8 154 57.1
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.9e-45 185.7 155 58.7
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 8.5e-45 184.1 166 54.2
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.5e-45 184.1 152 57.9
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.5e-44 181.4 152 57.2
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.6e-43 178.3 153 55.6
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 3.0e-42 175.6 157 54.1
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 3.9e-42 175.3 156 54.5
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 6.7e-42 174.5 157 54.1
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 8.8e-42 174.1 153 56.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.8e-42 174.1 150 56.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 8.8e-42 174.1 156 55.8
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.5e-41 173.3 161 51.6
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 2.5e-41 172.6 155 55.5
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 5.7e-41 171.4 145 55.9
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.3e-40 170.2 156 55.1
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.7e-40 169.9 127 70.9
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 1.7e-40 169.9 161 50.3
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-40 169.5 155 54.8
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 2.8e-40 169.1 162 54.3
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 6.3e-40 167.9 155 53.5
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 1.1e-39 167.2 155 52.9
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 1.4e-39 166.8 155 52.9
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.8e-39 166.4 152 50.7
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 4.1e-39 165.2 155 52.9
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.2e-38 163.7 143 54.5
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.5e-38 163.3 157 52.2
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 7.7e-38 161.0 121 60.3
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.3e-37 160.2 141 56.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 2.9e-37 159.1 151 51.7
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 2.9e-37 159.1 151 51.7
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 5.0e-37 158.3 151 51.0
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 5.0e-37 158.3 151 51.0
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 9.4e-36 154.1 160 49.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 4.7e-35 151.8 154 48.7
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 7.9e-35 151.0 151 49.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 8.8e-34 147.5 157 50.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.6e-33 146.0 151 53.6
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 7.4e-33 144.4 149 52.3
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 7.4e-33 144.4 160 48.1
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 8.2e-32 141.0 165 43.6
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.1e-31 140.6 161 46.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.4e-31 140.2 152 45.4
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.8e-31 139.8 151 45.7
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.5e-30 135.6 152 42.8
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 4.5e-30 135.2 161 45.3
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 5.9e-30 134.8 161 44.7
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.1e-28 130.6 120 55.8
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 4.7e-27 125.2 149 44.3
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 6.7e-26 121.3 150 41.3
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 1.1e-25 120.6 159 42.8
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 1.1e-25 120.6 148 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 1.3e-21 107.1 151 37.7
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 5.5e-20 101.7 151 41.7
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 9.1e-15 84.3 61 57.4
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.0e-10 70.9 134 35.8
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 2.6e-09 66.2 55 65.5
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 1.7e-08 63.5 114 39.5
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 6.3e-08 61.6 141 31.2
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 8.3e-08 61.2 115 27.8
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 1.4e-07 60.5 120 30.0
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 4.1e-07 58.9 115 31.3
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 5.4e-07 58.5 115 30.4
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 9.2e-07 57.8 120 29.2
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 9.2e-07 57.8 120 29.2
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 1.2e-06 57.4 115 30.4
Aa31LG7G11480 Aethionema arabicum HOM05D002728 ORTHO05D002874 2.7e-06 56.2 120 28.3


User provided reference genes

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