Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1793.9 998 100.0
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1756.9 998 98.1
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1752.6 998 97.9
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1752.3 1021 96.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 0.0e+00 1742.6 998 97.3
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 0.0e+00 1602.4 1010 85.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 0.0e+00 1325.8 1017 71.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 0.0e+00 1218.8 1020 67.0
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 0.0e+00 1104.4 1010 62.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.4e-310 1069.7 1012 60.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.2e-305 1052.4 1010 58.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.6e-301 1038.9 1014 58.3
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.8e-297 1025.0 1020 57.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.6e-295 1018.5 1009 58.4
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.8e-294 1014.2 1009 58.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 3.7e-292 1008.4 1003 57.3
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 7.3e-288 994.2 1008 57.4
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 4.0e-286 988.4 1005 56.0
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.5e-285 986.5 1006 56.3
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 7.5e-285 984.2 907 61.9
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.2e-284 982.6 1081 55.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.4e-283 979.9 1006 55.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.8e-283 979.5 996 56.7
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-282 976.5 1014 56.1
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 7.8e-282 974.2 1014 56.3
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.7e-281 973.0 1025 55.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 5.0e-281 971.5 995 55.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.2e-279 966.8 995 55.8
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.4e-278 963.4 995 55.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.2e-275 952.2 851 63.3
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 7.0e-275 951.0 1014 55.2
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 8.6e-273 944.1 1005 55.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.1e-270 937.2 1019 55.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 5.2e-270 934.9 979 55.9
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.6e-269 932.6 1014 54.5
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.2e-263 911.4 1002 53.8
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 5.2e-262 908.3 847 61.4
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 4.4e-261 905.2 998 53.6
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 7.6e-261 904.4 1032 52.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.8e-260 902.1 1015 55.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 4.9e-260 901.7 1012 53.2
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.9e-259 899.8 1041 51.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-259 899.4 1022 52.8
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.3e-256 889.0 1013 52.5
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 9.9e-253 877.5 1003 52.9
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 5.1e-249 865.1 1021 51.3
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.3e-247 860.5 1008 50.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 2.8e-247 859.4 950 53.6
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.3e-246 855.1 1013 52.1
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 3.4e-245 852.4 904 54.6
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.1e-242 843.2 1007 50.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 5.1e-241 838.6 1036 50.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 5.3e-238 828.6 1004 50.9
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.9e-236 822.8 835 56.4
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 8.7e-233 811.2 990 49.2
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.5e-232 810.4 990 49.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 9.6e-232 807.7 1133 46.5
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 9.6e-232 807.7 993 49.8
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.3e-231 807.4 991 48.8
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.8e-229 798.5 767 58.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 4.9e-228 795.4 1042 46.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.1e-227 794.3 969 50.7
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.5e-227 792.0 1019 48.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 7.1e-227 791.6 1041 47.7
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 2.1e-226 790.0 799 55.3
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 7.4e-224 781.6 1054 47.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.2e-221 774.2 1003 47.0
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 7.6e-221 771.5 1047 46.3
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.0e-220 768.8 1013 47.4
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.8e-214 750.4 986 46.5
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.9e-214 748.4 993 45.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.0e-212 744.6 1075 46.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.2e-212 743.4 1036 45.8
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 2.3e-209 733.4 884 50.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.8e-207 726.5 1035 44.5
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.4e-206 724.2 1002 45.7
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.2e-196 690.3 564 67.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 6.5e-196 688.7 996 43.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.2e-195 686.0 1007 42.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.1e-194 683.7 996 44.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 4.7e-194 682.6 1001 41.8
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.1e-190 671.4 1046 42.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.6e-189 667.5 953 45.2
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 7.2e-187 658.7 1052 41.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.4e-185 654.4 1077 40.8
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.5e-184 651.0 1010 42.9
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 2.2e-183 647.1 579 60.8
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 5.5e-179 632.5 590 60.5
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.2e-179 632.1 993 41.8
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 8.0e-178 628.6 406 84.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.5e-176 624.4 992 41.2
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-176 623.6 625 57.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.3e-175 619.0 993 41.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 2.3e-172 610.5 996 41.6
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 3.8e-172 609.8 991 41.1
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.8e-172 609.8 1046 40.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 8.6e-172 608.6 991 41.0
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 8.6e-172 608.6 1002 40.4
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.8e-169 600.9 988 40.0
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.3e-169 600.5 992 40.5
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.2e-169 599.4 763 48.5
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 6.8e-169 599.0 1011 39.8
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 5.8e-168 595.9 998 39.6
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.5e-168 595.5 1002 40.5
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 6.4e-167 592.4 1002 39.6
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.4e-166 590.5 998 38.9
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 5.4e-166 589.3 997 39.6
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 5.4e-166 589.3 1002 39.0
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.6e-165 587.8 1008 38.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.0e-165 587.4 995 40.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-156 557.0 695 49.2
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.9e-148 530.0 984 38.2
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.0e-141 506.1 662 48.0
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.8e-137 494.6 771 42.5
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.2e-135 487.6 379 70.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 9.3e-134 482.3 776 39.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 2.7e-133 480.7 1057 33.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 3.5e-133 480.3 985 35.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.7e-132 478.0 764 40.2
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 2.5e-131 474.2 490 55.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 7.9e-125 452.6 787 38.1
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.3e-124 451.8 803 37.4
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.8e-124 451.4 528 49.4
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.0e-124 450.7 553 47.6
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.8e-122 443.4 589 47.9
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 3.0e-116 424.1 394 60.9
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 3.1e-113 414.1 804 36.3
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 4.0e-113 413.7 1050 30.9
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.7e-108 396.4 1044 29.6
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.4e-105 388.7 551 42.3
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 3.2e-102 377.5 332 60.5
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 4.3e-99 367.1 732 36.3
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.9e-97 359.8 1118 28.3
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 8.2e-90 336.3 654 37.3
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.1e-86 325.9 1082 29.4
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 9.4e-86 322.8 286 60.8
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.4e-84 318.9 253 67.6
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.2e-78 296.6 269 61.3
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.3e-71 275.8 240 61.2
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 8.3e-66 256.5 532 37.2
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.4e-65 255.0 680 32.1
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-58 232.3 425 39.5
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-57 228.0 423 39.2
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.3e-54 218.0 472 35.4
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.7e-50 204.5 263 51.7
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.3e-50 203.4 185 60.5
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.0e-47 196.4 373 37.8
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.2e-45 187.2 223 49.8
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.5e-43 182.6 388 34.8
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.4e-43 181.4 193 52.3
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 2.7e-40 171.8 538 30.3
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 7.8e-40 170.2 207 50.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.3e-38 164.9 169 53.8
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.2e-37 162.9 219 49.3
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.1e-36 158.3 147 54.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-35 156.4 134 62.7
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.5e-35 156.0 383 32.1
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-31 141.7 277 37.5
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 8.1e-29 133.7 100 74.0
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-25 122.5 188 42.6
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 7.8e-24 117.1 87 69.0
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-21 108.6 130 43.8
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.1e-20 106.7 98 53.1
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.5e-19 102.8 100 55.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 5.8e-19 100.9 83 66.3
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.2e-17 94.7 95 52.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 7.9e-16 90.5 96 46.9
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.0e-15 88.6 162 37.0
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.3e-14 85.1 77 49.4
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.3e-14 84.7 117 45.3
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 6.2e-13 80.9 83 47.0
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.4e-12 79.0 93 41.9
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.4e-12 79.0 75 48.0
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-11 76.6 68 63.2
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.5e-11 76.3 134 34.3
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 3.8e-10 71.6 194 28.9
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 6.4e-10 70.9 193 30.1
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-08 66.2 103 40.8
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-07 63.2 97 42.3
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.3e-07 63.2 84 41.7
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 3.0e-07 62.0 54 59.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 5.1e-07 61.2 191 31.4
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 4.3e-06 58.2 145 29.7
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 7.4e-06 57.4 70 41.4


User provided reference genes

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