Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.2e-125 451.8 238 100.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-124 449.5 238 99.2
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.0e-124 447.6 238 98.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.8e-123 446.0 238 98.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.1e-123 444.5 238 98.3
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.8e-120 436.0 238 96.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 8.5e-110 400.6 238 89.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.2e-109 398.3 238 88.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.4e-96 356.7 243 77.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.5e-95 351.7 242 78.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.1e-93 347.1 243 76.5
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.4e-93 346.7 240 77.5
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.4e-93 344.0 238 77.3
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-91 339.3 244 74.2
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 5.2e-91 338.2 240 77.9
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.2e-91 338.2 244 74.6
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 6.7e-91 337.8 242 74.0
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.1e-90 337.0 244 73.0
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.6e-90 335.9 240 77.1
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 210 82.4
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 74.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.2e-89 332.8 244 72.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.8e-89 332.4 207 81.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.3e-89 331.3 249 71.9
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.2e-89 330.9 243 71.6
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-88 329.7 244 71.3
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.4e-88 329.3 245 73.5
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.1e-88 328.9 243 73.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 4.1e-88 328.6 242 72.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.1e-88 328.6 240 75.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 5.3e-88 328.2 244 71.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.3e-88 328.2 240 74.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.2e-87 327.0 243 74.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.0e-87 326.2 242 72.7
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.0e-87 326.2 243 74.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 3.5e-87 325.5 243 73.3
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 5.9e-87 324.7 240 74.2
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 7.7e-87 324.3 207 80.2
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.0e-86 323.9 242 71.9
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.7e-86 323.2 209 79.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 72.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.7e-86 323.2 206 81.6
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.2e-86 322.8 243 72.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.2e-86 322.8 244 72.1
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.9e-86 322.4 243 72.8
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.9e-86 322.4 243 72.0
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.9e-86 322.4 241 70.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 6.5e-86 321.2 206 80.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.1e-85 320.5 206 80.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.1e-85 320.5 207 80.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.1e-85 320.5 207 80.7
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-85 320.1 239 71.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-85 320.1 239 71.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-85 318.9 239 70.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.2e-85 318.5 207 80.2
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 4.2e-85 318.5 240 70.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 5.5e-85 318.2 243 72.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.1e-84 316.2 243 70.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 4.7e-84 315.1 206 80.1
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.7e-84 315.1 241 69.3
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 4.7e-84 315.1 247 70.0
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.7e-84 315.1 203 80.3
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.0e-83 313.9 240 70.8
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.3e-83 312.8 243 70.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 4.0e-83 312.0 206 79.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 6.7e-83 311.2 233 70.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 6.7e-83 311.2 240 68.8
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 6.7e-83 311.2 206 78.6
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.2e-82 310.5 248 69.0
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-82 310.5 241 67.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.0e-82 309.7 204 78.9
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 9.7e-82 307.4 197 80.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.2e-81 306.2 205 76.1
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.2e-81 306.2 242 69.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.2e-81 306.2 203 78.3
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.8e-81 305.8 240 69.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.7e-81 305.4 240 67.5
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 4.8e-81 305.1 240 68.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.8e-81 305.1 243 67.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 6.3e-81 304.7 244 66.8
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 8.2e-81 304.3 207 76.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 67.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.8e-80 303.1 230 68.7
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.4e-80 302.8 194 81.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.1e-80 302.4 233 71.2
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.1e-80 302.4 229 72.1
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.1e-80 302.4 212 74.1
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.1e-80 302.0 233 71.2
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 5.3e-80 301.6 198 77.8
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.0e-80 301.2 243 69.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.2e-79 300.4 240 66.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.6e-79 300.1 240 67.9
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.6e-79 300.1 206 74.8
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.0e-78 297.4 240 68.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.7e-78 296.6 203 75.9
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.2e-78 296.2 229 71.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.9e-78 295.8 240 65.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 6.5e-78 294.7 200 76.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.5e-77 292.7 237 67.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 200 76.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.2e-77 292.0 243 66.7
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.5e-77 291.6 237 67.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.1e-76 289.7 237 66.2
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.7e-76 289.3 237 66.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.7e-76 289.3 230 68.3
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.6e-76 288.9 209 72.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 6.1e-76 288.1 237 66.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.3e-75 286.2 243 66.3
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.3e-75 286.2 212 69.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.0e-75 285.8 237 66.2
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 65.0
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 65.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.0e-74 283.1 242 64.0
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.4e-74 282.0 245 63.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.8e-74 280.8 237 64.1
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.8e-74 280.8 237 64.1
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.1e-72 275.4 244 61.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 7.0e-72 274.6 184 77.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.5e-71 272.3 224 70.5
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.5e-71 271.9 211 71.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.7e-70 270.0 204 69.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.9e-69 266.5 239 60.7
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.8e-68 262.7 179 76.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.8e-67 260.0 228 62.7
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-65 253.4 165 82.4
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.8e-65 252.7 198 67.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.4e-64 249.6 226 60.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 5.8e-58 228.4 235 55.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 6.4e-57 224.9 238 60.1
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.4e-56 223.8 152 76.3
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.3e-54 216.5 192 60.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 6.6e-54 214.9 134 84.3
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.2e-49 199.9 112 91.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.9e-38 162.5 104 76.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 8.6e-38 161.4 177 52.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 8.1e-36 154.8 174 51.1
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.0e-35 152.5 85 97.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.0e-30 137.9 87 79.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.9e-29 133.7 188 41.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.6e-28 129.4 120 59.2
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.3e-24 114.8 75 86.7
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.0e-22 109.8 78 78.2
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.6e-20 104.0 91 65.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 9.9e-18 94.7 57 80.7
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-17 93.6 57 87.7
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 8.4e-17 91.7 51 94.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.9e-16 90.5 201 31.3
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.7e-14 81.6 220 28.2


User provided reference genes

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