Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-233 812.4 399 100.0
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 6.8e-229 797.0 428 93.2
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.0e-225 785.4 425 91.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 4.4e-220 767.7 396 95.5
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 3.3e-199 698.4 396 86.9
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.1e-181 640.2 398 79.1
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 9.3e-170 600.5 398 73.6
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 1.2e-164 583.6 422 69.2
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.1e-159 567.0 425 71.1
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 5.3e-157 558.1 392 68.6
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 9.1e-157 557.4 392 69.4
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.9e-155 552.4 393 68.2
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 3.2e-154 548.9 395 69.4
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 1.6e-153 546.6 392 67.6
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 6.1e-153 544.7 402 67.9
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 4.4e-151 538.5 392 68.4
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.2e-150 536.2 391 67.0
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 4.8e-150 535.0 394 66.5
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 8.2e-150 534.3 393 67.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 5.3e-149 531.6 395 67.3
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 5.3e-149 531.6 413 63.9
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 3.5e-148 528.9 394 66.0
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 2.2e-147 526.2 392 66.6
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.0e-147 525.0 394 65.5
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.9e-146 523.1 391 65.2
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 4.2e-146 521.9 397 64.7
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 4.7e-145 518.5 418 63.4
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 6.1e-145 518.1 395 65.8
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 8.0e-145 517.7 391 64.2
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 2.3e-144 516.2 403 63.5
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.6e-143 512.7 459 58.6
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 9.7e-143 510.8 417 61.2
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.4e-141 506.9 395 63.0
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.4e-141 506.9 395 63.5
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.8e-141 506.5 396 63.9
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.2e-140 503.8 395 63.0
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.6e-140 503.4 395 63.3
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 2.0e-140 503.1 475 56.0
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 8.5e-139 497.7 373 66.0
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 2.5e-138 496.1 391 61.9
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 5.5e-138 495.0 392 63.3
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.2e-137 493.8 396 61.9
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.2e-137 493.8 393 63.1
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.6e-137 493.4 363 66.7
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 2.1e-137 493.0 396 62.4
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 2.1e-137 493.0 393 61.6
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.7e-137 492.7 391 62.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.7e-137 492.7 394 61.7
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 3.6e-137 492.3 393 61.6
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 3.6e-137 492.3 394 62.7
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 6.1e-137 491.5 393 61.6
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 6.1e-137 491.5 393 61.6
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 6.1e-137 491.5 392 62.2
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.0e-136 490.7 393 63.1
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.8e-136 490.0 393 63.1
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 3.0e-136 489.2 393 61.8
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 8.8e-136 487.6 391 60.6
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 2.0e-135 486.5 392 62.2
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.0e-135 486.5 393 60.8
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.6e-135 486.1 412 59.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 2.6e-135 486.1 391 62.7
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 7.5e-135 484.6 396 61.6
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 7.5e-135 484.6 492 53.5
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.7e-134 483.4 393 61.6
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.7e-134 483.4 393 61.6
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 3.7e-134 482.3 393 61.8
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 8.3e-134 481.1 392 60.7
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 3.1e-133 479.2 393 60.6
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 9.1e-133 477.6 393 60.8
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 9.1e-133 477.6 398 61.8
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.6e-132 476.9 394 62.7
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 2.1e-129 466.5 401 58.9
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 7.5e-127 458.0 398 58.0
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 1.3e-126 457.2 410 56.8
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.1e-125 454.1 382 60.5
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.2e-124 450.7 392 57.7
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.7e-123 446.8 391 57.5
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.5e-122 443.7 392 55.4
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 8.9e-120 434.5 382 57.9
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.5e-119 433.7 386 56.7
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 2.0e-119 433.3 392 55.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.6e-116 423.7 398 53.5
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.7e-115 420.2 501 48.5
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 2.5e-114 416.4 392 56.6
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.6e-114 415.2 385 55.8
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 4.7e-113 412.1 394 53.3
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.3e-107 393.3 313 61.3
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 3.6e-97 359.4 343 53.9
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-88 331.3 276 64.1
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 4.0e-88 329.3 243 65.4
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 2.0e-87 327.0 291 57.7
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 2.8e-81 306.6 392 40.8
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 8.1e-81 305.1 393 44.0
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.6e-79 300.1 304 53.0
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 3.5e-76 289.7 218 64.2
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 2.3e-75 287.0 175 75.4
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 3.3e-74 283.1 396 40.4
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 8.1e-73 278.5 342 44.7
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.4e-72 276.9 388 45.6
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.3e-70 271.2 412 43.4
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 5.1e-67 259.2 175 67.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.5e-66 256.9 239 55.6
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 3.1e-64 250.0 247 53.0
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 4.0e-64 249.6 138 81.2
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 3.8e-62 243.0 145 71.7
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 5.0e-54 216.1 396 38.1
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 4.6e-52 209.5 160 63.8
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.6e-52 209.5 115 80.9
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.8e-49 200.3 570 28.8
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.1e-48 196.8 145 66.9
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.0e-47 194.1 117 76.9
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 5.5e-45 186.0 176 58.5
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.1e-42 178.3 155 56.8
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.2e-39 168.3 280 37.9
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 3.4e-39 166.8 281 38.4
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 8.5e-38 162.2 243 41.2
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.5e-34 151.4 97 71.1
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 4.4e-34 149.8 447 28.6
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.5e-29 134.8 233 39.1
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.5e-29 134.8 233 39.1
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.2e-25 120.9 75 77.3
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 7.0e-24 115.9 58 84.5
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.9e-22 110.5 393 27.5
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.5e-21 107.5 176 39.2
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.4e-19 101.7 54 87.0
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.5e-18 98.2 115 47.0
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 1.8e-16 91.3 465 26.2
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.1e-16 90.1 56 64.3
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 3.5e-15 87.0 50 76.0
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 8.5e-14 82.4 419 24.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 3.4e-10 70.5 40 75.0
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.3e-09 68.6 41 73.2
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 1.8e-08 64.7 48 54.2
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 1.8e-08 64.7 50 60.0
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 1.2e-07 62.0 27 81.5
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 5.0e-06 56.6 381 24.7


User provided reference genes

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