Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0159 Fragaria x ananassa HOM05D002899 ORTHO05D010192 1.9e-59 232.3 112 100.0
FvH4_2g25582 Fragaria vesca HOM05D002899 ORTHO05D010192 4.8e-55 217.6 111 94.6
FAN27G1849 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.4e-54 215.3 111 93.7
RcHm_v2.0_Chr6g0293811 Rosa chinensis HOM05D002899 ORTHO05D010192 2.2e-31 139.0 126 64.3
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 9.4e-19 97.1 110 52.7
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 4.0e-17 91.7 115 52.2
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 4.0e-17 91.7 119 47.9
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 5.2e-17 91.3 94 52.1
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 3.3e-16 88.6 103 48.5
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 2.4e-14 82.4 90 46.7
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 5.3e-14 81.3 104 46.2
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 9.1e-14 80.5 106 41.5
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.1e-14 80.5 106 41.5
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 9.1e-14 80.5 106 41.5
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 9.1e-14 80.5 106 41.5
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 2.0e-13 79.3 104 45.2
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.0e-13 79.3 104 44.2
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 2.7e-13 79.0 105 41.9
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 4.5e-13 78.2 103 47.6
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 4.5e-13 78.2 97 49.5
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 5.9e-13 77.8 103 46.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 5.9e-13 77.8 86 51.2
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 5.9e-13 77.8 94 44.7
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 5.9e-13 77.8 106 40.6
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 7.7e-13 77.4 88 52.3
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 7.7e-13 77.4 86 50.0
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 7.7e-13 77.4 104 44.2
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 1.0e-12 77.0 107 46.7
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.0e-12 77.0 107 46.7
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 1.3e-12 76.6 82 46.3
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 1.7e-12 76.3 90 45.6
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.7e-12 76.3 88 42.0
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.7e-12 76.3 108 46.3
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.7e-12 76.3 97 48.5
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 2.2e-12 75.9 94 45.7
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 2.2e-12 75.9 88 45.5
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 2.9e-12 75.5 108 42.6
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.9e-12 75.5 102 45.1
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 2.9e-12 75.5 57 64.9
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 2.9e-12 75.5 73 57.5
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 2.9e-12 75.5 73 57.5
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 2.9e-12 75.5 109 44.0
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 5.0e-12 74.7 84 46.4
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 5.0e-12 74.7 83 49.4
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 5.0e-12 74.7 81 48.1
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 6.5e-12 74.3 104 43.3
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 8.5e-12 73.9 88 48.9
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 8.5e-12 73.9 107 43.9
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 8.5e-12 73.9 89 41.6
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 8.5e-12 73.9 88 42.0
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.1e-11 73.6 92 46.7
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.1e-11 73.6 91 47.3
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.1e-11 73.6 84 53.6
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 1.1e-11 73.6 104 40.4
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.1e-11 73.6 86 51.2
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 1.1e-11 73.6 111 44.1
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 1.1e-11 73.6 112 41.1
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 1.1e-11 73.6 83 49.4
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.5e-11 73.2 112 38.4
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.5e-11 73.2 88 42.0
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 1.5e-11 73.2 100 47.0
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.5e-11 73.2 86 51.2
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 1.5e-11 73.2 112 42.0
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.5e-11 73.2 83 48.2
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 1.5e-11 73.2 73 56.2
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.9e-11 72.8 71 56.3
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 1.9e-11 72.8 82 50.0
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 1.9e-11 72.8 58 58.6
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.9e-11 72.8 100 46.0
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 2.5e-11 72.4 90 44.4
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 2.5e-11 72.4 115 42.6
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.5e-11 72.4 84 47.6
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 3.2e-11 72.0 88 42.0
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.2e-11 71.6 99 44.4
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.2e-11 71.6 91 41.8
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 4.2e-11 71.6 91 48.4
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 5.5e-11 71.2 59 61.0
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 5.5e-11 71.2 73 54.8
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.5e-11 71.2 91 41.8
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 5.5e-11 71.2 84 48.8
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 7.2e-11 70.9 110 40.0
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 9.4e-11 70.5 101 44.6
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 9.4e-11 70.5 96 45.8
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.2e-10 70.1 113 39.8
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.2e-10 70.1 104 41.3
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 1.2e-10 70.1 85 43.5
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.2e-10 70.1 94 42.6
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.2e-10 70.1 65 58.5
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 1.6e-10 69.7 105 41.0
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.1e-10 69.3 90 44.4
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 2.1e-10 69.3 108 38.0
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.7e-10 68.9 90 43.3
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 2.7e-10 68.9 80 45.0
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 3.6e-10 68.6 91 42.9
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 3.6e-10 68.6 71 54.9
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 3.6e-10 68.6 92 43.5
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.6e-10 68.6 74 47.3
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 4.7e-10 68.2 74 51.4
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 4.7e-10 68.2 74 52.7
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 4.7e-10 68.2 74 52.7
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.7e-10 68.2 54 59.3
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 8.0e-10 67.4 118 35.6
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 1.0e-09 67.0 93 41.9
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 1.0e-09 67.0 83 49.4
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.4e-09 66.6 92 41.3
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 1.4e-09 66.6 108 37.0
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.8e-09 66.2 59 55.9
CDE02G4151 Ceratophyllum demersum HOM05D000614 ORTHO05D000463 4.0e-09 65.1 62 53.2
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 5.2e-09 64.7 87 42.5
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 5.2e-09 64.7 99 38.4
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.2e-09 64.7 105 41.0
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 6.8e-09 64.3 93 44.1
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 6.8e-09 64.3 84 42.9
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 8.8e-09 63.9 82 47.6
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 1.2e-08 63.5 62 50.0
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 3.4e-08 62.0 93 40.9
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 3.4e-08 62.0 53 56.6
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 3.4e-08 62.0 80 43.8
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 4.4e-08 61.6 91 37.4
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 4.4e-08 61.6 107 36.4
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 7.5e-08 60.8 50 56.0
BolC5t30252H Brassica oleracea HOM05D002899 ORTHO05D010192 7.5e-08 60.8 50 56.0
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 7.5e-08 60.8 78 41.0
Medtr7g070300 Medicago truncatula HOM05D002899 ORTHO05D010192 7.5e-08 60.8 81 44.4
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 9.8e-08 60.5 103 33.0
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 1.3e-07 60.1 74 47.3
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.2e-07 59.3 102 36.3
DCAR_009032 Daucus carota HOM05D002899 ORTHO05D010792 3.7e-07 58.5 69 43.5
FvH4_4g13670 Fragaria vesca HOM05D002899 ORTHO05D010192 3.7e-07 58.5 80 45.0
FAN12G4041 Fragaria x ananassa HOM05D002899 ORTHO05D010192 4.8e-07 58.2 43 65.1
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 4.8e-07 58.2 90 38.9
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 4.8e-07 58.2 68 47.1
C05p15440 Brassica napus HOM05D002899 ORTHO05D003850 6.3e-07 57.8 106 36.8
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 6.3e-07 57.8 54 51.9
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.3e-07 57.8 58 53.4
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 8.3e-07 57.4 51 52.9
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 9.1e-06 53.9 65 44.6
RcHm_v2.0_Chr4g0414501 Rosa chinensis HOM05D002899 ORTHO05D010192 9.1e-06 53.9 64 48.4


User provided reference genes

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