Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1917 Fragaria x ananassa HOM05D001027 ORTHO05D045569 9.5e-143 510.4 297 100.0
FvH4_1g17810 Fragaria vesca HOM05D001027 ORTHO05D045569 2.6e-140 502.3 297 97.6
FAN28G0036 Fragaria x ananassa HOM05D001027 ORTHO05D000844 3.8e-107 392.1 300 77.3
FAN26G1797 Fragaria x ananassa HOM05D001027 ORTHO05D000844 2.3e-104 382.9 347 72.3
FAN23G0778 Fragaria x ananassa HOM05D001027 ORTHO05D000844 5.5e-82 308.5 250 78.0
Sed0025250 Sechium edule HOM05D001027 ORTHO05D000844 7.3e-10 68.9 91 42.9
Haze_15991 Corylus avellana HOM05D001027 ORTHO05D000844 1.2e-09 68.2 77 48.1
Thecc.06G115200 Theobroma cacao HOM05D001027 ORTHO05D000844 2.1e-09 67.4 77 48.1
FAN23G0596 Fragaria x ananassa HOM05D001027 ORTHO05D209076 2.8e-09 67.0 44 84.1
Gohir.A05G136700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.6e-09 66.6 77 45.5
Gohir.D05G138700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.6e-09 66.6 77 45.5
Gorai.009G143000 Gossypium raimondii HOM05D001027 ORTHO05D000844 3.6e-09 66.6 77 45.5
Cfa003557 Carpinus fangiana HOM05D001027 ORTHO05D000844 4.7e-09 66.2 77 46.8
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 4.7e-09 66.2 91 45.1
CsaV3_3G043700 Cucumis sativus L. HOM05D000250 ORTHO05D000625 1.4e-08 64.7 92 43.5
Duzib235G1421 Durio zibethinus HOM05D001027 ORTHO05D000844 3.1e-08 63.5 76 47.4
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 3.1e-08 63.5 77 44.2
ATR0789G050 Amborella trichopoda HOM05D001027 ORTHO05D000844 4.0e-08 63.2 72 44.4
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 4.0e-08 63.2 79 43.0
TPR.G7889 Trifolium pratense HOM05D000208 ORTHO05D000130 5.2e-08 62.8 73 41.1
HPP92_006477 Vanilla planifolia HOM05D001027 ORTHO05D000844 5.2e-08 62.8 81 40.7
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 8.9e-08 62.0 76 43.4
CDE06G2372 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 1.5e-07 61.2 74 43.2
THA.LOC104815633 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 1.5e-07 61.2 77 41.6
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 1.5e-07 61.2 74 43.2
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 2.0e-07 60.8 72 44.4
Aqoxy7G01156 Aquilegia oxysepala HOM05D001027 ORTHO05D000844 2.6e-07 60.5 72 43.1
BcaB03g12995 Brassica carinata HOM05D001027 ORTHO05D000844 2.6e-07 60.5 72 44.4
HanXRQChr10g0288331 Helianthus annuus HOM05D001027 ORTHO05D000844 2.6e-07 60.5 51 56.9
HanXRQChr11g0349191 Helianthus annuus HOM05D001027 ORTHO05D000844 2.6e-07 60.5 51 56.9
Nitab4.5_0005003g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 2.6e-07 60.5 66 48.5
Nitab4.5_0009641g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 2.6e-07 60.5 66 47.0
Prupe.3G045300 Prunus persica HOM05D001027 ORTHO05D000844 2.6e-07 60.5 77 44.2
EL10Ac8g19173 Beta vulgaris HOM05D001027 ORTHO05D000844 3.4e-07 60.1 68 47.1
Cc04_g01670 Coffea canephora HOM05D001027 ORTHO05D000844 3.4e-07 60.1 123 30.1
Eucgr.J02841 Eucalyptus grandis HOM05D001027 ORTHO05D000844 3.4e-07 60.1 77 44.2
Potri.006G147400 Populus trichocarpa HOM05D001027 ORTHO05D000844 3.4e-07 60.1 72 45.8
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 4.4e-07 59.7 94 38.3
Aa31LG7G2330 Aethionema arabicum HOM05D001027 ORTHO05D000844 4.4e-07 59.7 72 44.4
Prupe.7G205700 Prunus persica HOM05D001027 ORTHO05D000844 4.4e-07 59.7 66 45.5
Sabra18G0058800 Salix brachista HOM05D001027 ORTHO05D000844 4.4e-07 59.7 68 44.1
SabraUnG0005200 Salix brachista HOM05D001027 ORTHO05D000844 4.4e-07 59.7 68 44.1
Zm00001eb155280 Zea mays HOM05D001027 ORTHO05D000844 4.4e-07 59.7 56 48.2
Aa31LG7G2060 Aethionema arabicum HOM05D001027 ORTHO05D000844 5.8e-07 59.3 72 44.4
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 5.8e-07 59.3 66 43.9
FAN05G5132 Fragaria x ananassa HOM05D000250 ORTHO05D000625 5.8e-07 59.3 54 53.7
Glyma.08G189900 Glycine max HOM05D001027 ORTHO05D000844 5.8e-07 59.3 76 42.1
MSTRG.22565 Avicennia marina HOM05D001027 ORTHO05D000844 7.5e-07 58.9 53 54.7
MSTRG.9507 Avicennia marina HOM05D001027 ORTHO05D000844 7.5e-07 58.9 53 56.6
Nn6g35538 Nelumbo nucifera HOM05D001027 ORTHO05D000844 7.5e-07 58.9 72 43.1
BcaC07g38868 Brassica carinata HOM05D001027 ORTHO05D000844 9.8e-07 58.5 72 43.1
A08p30860 Brassica napus HOM05D001027 ORTHO05D000844 9.8e-07 58.5 72 43.1
C08p18060 Brassica napus HOM05D001027 ORTHO05D000844 9.8e-07 58.5 72 43.1
BolC8t49438H Brassica oleracea HOM05D001027 ORTHO05D000844 9.8e-07 58.5 72 43.1
BraA08t35017Z Brassica rapa HOM05D001027 ORTHO05D000844 9.8e-07 58.5 72 43.1
Manes.04G141700 Manihot esculenta HOM05D001027 ORTHO05D000844 9.8e-07 58.5 74 44.6
Peaxi162Scf00152g00527 Petunia axillaris HOM05D001027 ORTHO05D000844 9.8e-07 58.5 52 51.9
SGA_v2.0_scaffold21G09416 Striga asiatica HOM05D001027 ORTHO05D000844 9.8e-07 58.5 69 46.4
AL1G29820 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 1.3e-06 58.2 72 43.1
CDE08G1661 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 1.3e-06 58.2 52 51.9
Thhalv10018950m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 1.3e-06 58.2 79 39.2
FAN14G2106 Fragaria x ananassa HOM05D001027 ORTHO05D000844 1.3e-06 58.2 52 53.8
Nn1g04540 Nelumbo nucifera HOM05D001027 ORTHO05D000844 1.3e-06 58.2 51 52.9
Sp5g27800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.3e-06 58.2 79 39.2
Atru.chr7.1631 Acer truncatum HOM05D001027 ORTHO05D000844 1.7e-06 57.8 87 36.8
Sp1g15660 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.7e-06 57.8 72 43.1
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 1.7e-06 57.8 89 39.3
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 1.7e-06 57.8 56 46.4
BcaC07g41377 Brassica carinata HOM05D001027 ORTHO05D000844 2.2e-06 57.4 84 41.7
Carub.0001s1729 Capsella rubella HOM05D001027 ORTHO05D000844 2.2e-06 57.4 72 43.1
Glyma.07G007200 Glycine max HOM05D001027 ORTHO05D000844 2.2e-06 57.4 72 43.1
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 2.2e-06 57.4 81 44.4
Lsat_1_v5_gn_4_93800 Lactuca sativa HOM05D001027 ORTHO05D000844 2.2e-06 57.4 55 50.9
Lj9A328T39 Lonicera japonica HOM05D001027 ORTHO05D000844 2.2e-06 57.4 52 51.9
Os12g0613300 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 2.2e-06 57.4 71 43.7
PSO832G4508 Papaver somniferum HOM05D001027 ORTHO05D000844 2.2e-06 57.4 66 42.4
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 2.2e-06 57.4 54 48.1
RcHm_v2.0_Chr2g0144441 Rosa chinensis HOM05D001027 ORTHO05D000844 2.2e-06 57.4 137 34.3
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 2.2e-06 57.4 104 34.6
AT1G17520 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 2.9e-06 57.0 72 41.7
BraA06t24497Z Brassica rapa HOM05D001027 ORTHO05D000844 2.9e-06 57.0 73 41.1
BraA09t41406Z Brassica rapa HOM05D001027 ORTHO05D000844 2.9e-06 57.0 86 43.0
CARHR018120 Cardamine hirsuta HOM05D001027 ORTHO05D000844 2.9e-06 57.0 72 41.7
Thhalv10008387m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 2.9e-06 57.0 72 43.1
Lj5g0001171 Lotus japonicus HOM05D001027 ORTHO05D000844 2.9e-06 57.0 109 35.8
MBI18_g10585_MAGBIO Magnolia biondii HOM05D001027 ORTHO05D000844 2.9e-06 57.0 52 51.9
MD09G1188600 Malus domestica HOM05D001027 ORTHO05D000844 2.9e-06 57.0 81 37.0
PSO063G4045 Papaver somniferum HOM05D001027 ORTHO05D000844 2.9e-06 57.0 113 33.6
C05p15950 Brassica napus HOM05D001027 ORTHO05D000844 3.7e-06 56.6 73 41.1
BolC5t30297H Brassica oleracea HOM05D001027 ORTHO05D000844 3.7e-06 56.6 73 41.1
DCAR_021950 Daucus carota HOM05D001027 ORTHO05D000844 3.7e-06 56.6 52 51.9
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 3.7e-06 56.6 53 50.9
Peaxi162Scf00038g01737 Petunia axillaris HOM05D001027 ORTHO05D000844 3.7e-06 56.6 49 53.1
Zm00001eb218710 Zea mays HOM05D001027 ORTHO05D000844 3.7e-06 56.6 141 33.3
CiPaw.06G165300 Carya illinoinensis HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 51.9
Cc06_g11670 Coffea canephora HOM05D001027 ORTHO05D000844 4.9e-06 56.2 57 45.6
FvH4_1g07940 Fragaria vesca HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
FvH4_2g03730 Fragaria vesca HOM05D001027 ORTHO05D000844 4.9e-06 56.2 56 48.2
FAN15G2341 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 56 48.2
FAN19G0620 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
FAN20G0065 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 56 48.2
FAN23G0537 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
FAN24G1747 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 56 48.2
FAN26G1071 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
FAN26G3240 Fragaria x ananassa HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
FAN28G1607 Fragaria x ananassa HOM05D000250 ORTHO05D000625 4.9e-06 56.2 52 50.0
HanXRQChr10g0290031 Helianthus annuus HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 51.9
Lalb_Chr14g0372681 Lupinus albus HOM05D001027 ORTHO05D000844 4.9e-06 56.2 75 42.7
PSO675G7435 Papaver somniferum HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 51.9
RcHm_v2.0_Chr2g0093821 Rosa chinensis HOM05D001027 ORTHO05D000844 4.9e-06 56.2 52 50.0
Thecc.10G040000 Theobroma cacao HOM05D001027 ORTHO05D000844 4.9e-06 56.2 60 45.0
Aa31LG4G3090 Aethionema arabicum HOM05D001027 ORTHO05D000844 6.4e-06 55.8 77 40.3
A09p60340 Brassica napus HOM05D001027 ORTHO05D000844 6.4e-06 55.8 74 44.6
Cpa.g.sc106.31 Carica papaya HOM05D001027 ORTHO05D000844 6.4e-06 55.8 54 50.0
ClCG10G010150 Citrullus lanatus HOM05D001027 ORTHO05D000844 6.4e-06 55.8 52 51.9
CsaV3_4G000180 Cucumis sativus L. HOM05D001027 ORTHO05D000844 6.4e-06 55.8 52 51.9
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 6.4e-06 55.8 62 46.8
Hma1.2p1_0672F.1_g200980 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 6.4e-06 55.8 64 43.8
Lsat_1_v5_gn_5_113860 Lactuca sativa HOM05D001027 ORTHO05D000844 6.4e-06 55.8 52 51.9
Nitab4.5_0000088g0060 Nicotiana tabacum HOM05D001027 ORTHO05D000844 6.4e-06 55.8 61 45.9
Nitab4.5_0006049g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 6.4e-06 55.8 61 45.9
Os01g0708000 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 6.4e-06 55.8 72 43.1
PGSC0003DMG400002489 Solanum tuberosum HOM05D001027 ORTHO05D000844 6.4e-06 55.8 66 43.9
TWI34G0703 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 6.4e-06 55.8 71 42.3
A07p38880 Brassica napus HOM05D000250 ORTHO05D000625 8.3e-06 55.5 81 37.0
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 8.3e-06 55.5 68 41.2
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 8.3e-06 55.5 70 42.9
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
MD10G1107300 Malus domestica HOM05D001027 ORTHO05D000844 8.3e-06 55.5 56 48.2
MD15G1211100 Malus domestica HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
Nn8g41043 Nelumbo nucifera HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
Potri.009G087000 Populus trichocarpa HOM05D001027 ORTHO05D000844 8.3e-06 55.5 70 48.6
PGR142G4246 Punica granatum HOM05D001027 ORTHO05D000844 8.3e-06 55.5 56 48.2
Sabra09G0066600 Salix brachista HOM05D001027 ORTHO05D000844 8.3e-06 55.5 70 48.6
Solyc11g044320.2 Solanum lycopersicum HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
Sopen11g019820 Solanum pennellii HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
PGSC0003DMG400023131 Solanum tuberosum HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 50.0
THA.LOC104808049 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 8.3e-06 55.5 72 43.1
TAR376G0109 Trochodendron aralioides HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 51.9
TAR628G1060 Trochodendron aralioides HOM05D001027 ORTHO05D000844 8.3e-06 55.5 52 51.9
unitig_699.g19292 Utricularia gibba HOM05D001606 ORTHO05D002266 8.3e-06 55.5 52 50.0


User provided reference genes

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