Gene: Sopen11g019820

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g019820
  • Transcript Identifier Sopen11g019820.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 45707855-45713509 : negative

Gene Family Information

  • ID HOM05D001027
  • #Genes/#Species 591/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g019820.1

Descriptions

  • Description Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats. | telomere repeat binding factor 1 (TRB1) | FUNCTIONS IN: DNA binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, double-stranded telomeric DNA binding | INVOLVED IN: in 8 processes | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , SANT, DNA-binding , Myb, DNA-binding , Homeodomain-like , Histone H1/H5 , Homeodomain-related , HTH transcriptional regulator, Myb-type, DNA-binding | BEST Arabidopsis thaliana protein match is: telomere repeat binding factor 3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006334
IEA
InterPronucleosome assembly
GO:0006357
ISO
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II AT1G49950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003691
IEA
InterProdouble-stranded telomeric DNA binding
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G49950
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G49950
GO:1990841
ISO
PLAZA Integrative Orthologypromoter-specific chromatin binding AT1G49950
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G49950

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
InterPronucleosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G49950
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT1G49950
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G49950
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT1G49950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR001005 SANT/Myb domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR009057 Homeobox-like domain superfamily
IPR005818 Linker histone H1/H5, domain H15
IPR044597 Single myb histone 1-6
IPR017930 Myb domain
Mapman id Description
12.3.3.2.1.2.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-recruiting factor (TRB)