Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-62 242.7 129 100.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 4.1e-58 228.0 146 87.7
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 8.5e-48 193.7 143 74.8
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.2e-47 191.8 135 81.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 9.4e-47 190.3 145 71.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-46 189.9 143 74.1
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.4e-45 186.4 145 70.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 7.5e-20 100.9 152 45.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.2e-17 93.6 152 42.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.0e-17 92.8 154 42.9
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.7e-17 92.4 149 43.0
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 7.8e-17 90.9 140 44.3
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.3e-16 90.1 130 42.3
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.0e-16 88.2 155 39.4
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 6.6e-16 87.8 147 40.1
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 8.6e-16 87.4 143 39.9
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.9e-15 86.3 159 39.6
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.5e-15 85.9 128 42.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.2e-14 83.6 155 38.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-14 83.2 131 39.7
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.6e-14 83.2 147 39.5
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.6e-14 83.2 148 39.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 4.7e-14 81.6 142 40.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-13 80.1 128 41.4
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.4e-13 80.1 148 39.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.8e-13 79.7 136 39.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.8e-13 79.7 156 38.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.3e-13 79.3 153 37.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.1e-13 79.0 132 40.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 3.1e-13 79.0 149 37.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.0e-13 78.6 138 38.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 5.2e-13 78.2 134 38.8
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 6.8e-13 77.8 149 36.2
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 8.9e-13 77.4 117 43.6
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.2e-12 77.0 116 42.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-12 76.6 131 39.7
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.5e-12 76.6 147 37.4
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.0e-12 76.3 137 39.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.0e-12 76.3 149 38.3
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.0e-12 76.3 151 33.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.0e-12 76.3 118 42.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.6e-12 75.9 143 37.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 3.4e-12 75.5 137 38.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.4e-12 75.1 127 42.5
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 5.8e-12 74.7 121 39.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.8e-12 74.7 120 39.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 5.8e-12 74.7 138 39.9
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 7.5e-12 74.3 152 35.5
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 7.5e-12 74.3 152 36.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.8e-12 73.9 141 34.8
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.3e-11 73.6 136 37.5
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-11 73.6 146 37.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.7e-11 73.2 141 38.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.7e-11 73.2 141 35.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.7e-11 73.2 128 39.1
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.2e-11 72.8 140 38.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.9e-11 72.4 137 37.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.9e-11 72.4 120 39.2
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.9e-11 72.4 150 36.0
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.7e-11 72.0 141 37.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.7e-11 72.0 121 41.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 4.9e-11 71.6 152 34.2
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.9e-11 71.6 149 34.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.9e-11 71.6 141 34.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.4e-11 71.2 129 36.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 8.3e-11 70.9 153 34.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 8.3e-11 70.9 128 37.5
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.1e-10 70.5 150 34.7
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-10 70.5 143 33.6
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.1e-10 70.5 132 37.1
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.4e-10 70.1 133 37.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.4e-10 70.1 119 37.8
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.2e-10 68.9 139 36.0
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.1e-10 68.6 132 37.9
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 5.4e-10 68.2 139 36.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.4e-10 68.2 131 34.4
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.0e-10 67.8 121 33.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 9.2e-10 67.4 136 38.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.2e-09 67.0 94 43.6
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.2e-09 67.0 134 35.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.6e-09 66.6 121 35.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-09 66.6 92 43.5
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.6e-09 66.6 167 33.5
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.0e-09 66.2 128 35.9
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.0e-09 66.2 143 37.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.0e-09 66.2 148 35.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.7e-09 65.9 139 32.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.5e-09 65.5 150 35.3
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 4.6e-09 65.1 144 35.4
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 7.8e-09 64.3 148 32.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.3e-08 63.5 106 37.7
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.3e-08 63.5 117 35.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.7e-08 63.2 138 34.8
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.7e-08 63.2 142 34.5
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.3e-08 62.8 134 35.8
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.3e-08 62.8 139 30.9
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-08 62.4 135 35.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.0e-08 62.4 87 41.4
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.0e-08 62.4 151 30.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-08 62.0 140 35.0
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.0e-08 61.6 135 34.8
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.0e-08 61.6 170 32.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.0e-08 61.6 134 35.1
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 6.6e-08 61.2 134 35.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 6.6e-08 61.2 94 36.2
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 8.6e-08 60.8 138 37.0
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-07 60.5 122 35.2
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-07 60.1 137 36.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-07 60.1 137 36.5
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.5e-07 60.1 150 30.0
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-07 59.7 142 33.8
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.9e-07 59.7 142 33.8
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.3e-07 58.9 128 32.8
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 5.6e-07 58.2 166 33.7
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 5.6e-07 58.2 157 31.8
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 5.6e-07 58.2 157 31.8
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 7.3e-07 57.8 135 32.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 7.3e-07 57.8 135 33.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 7.3e-07 57.8 135 33.3
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.3e-07 57.8 107 33.6
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 9.5e-07 57.4 135 31.9
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 9.5e-07 57.4 90 38.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.2e-06 57.0 134 30.6
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.1e-06 56.2 105 33.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-06 55.5 133 35.3
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.6e-06 55.5 133 35.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.6e-06 55.5 133 35.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.7e-06 55.1 139 32.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.7e-06 55.1 139 32.4
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.2e-06 54.7 65 46.2
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.2e-06 54.7 87 37.9
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.2e-06 54.7 93 38.7


User provided reference genes

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