Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.2e-92 342.0 214 100.0
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 4.3e-89 331.6 214 94.4
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.9e-87 324.3 214 87.9
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.2e-86 323.6 214 91.1
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 3.4e-86 322.0 214 92.5
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.8e-82 307.4 214 90.7
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 2.7e-75 285.8 159 91.8
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 6.1e-51 204.9 155 86.5
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.1e-51 204.9 155 85.8
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.2e-50 201.8 155 91.0
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.8e-50 201.4 155 92.3
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.2e-49 200.7 155 92.9
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 8.0e-43 177.9 155 63.9
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 9.2e-39 164.5 99 78.8
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 1.6e-38 163.7 99 79.8
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.6e-33 146.4 97 71.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.3e-32 144.1 99 71.7
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.9e-31 140.2 99 69.7
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.4e-31 139.8 92 75.0
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 2.4e-31 139.8 92 75.0
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 4.1e-31 139.0 99 69.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.6e-30 137.1 99 67.7
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.6e-30 137.1 99 67.7
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 4.6e-30 135.6 93 72.0
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 6.0e-30 135.2 99 65.7
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 1.3e-29 134.0 93 71.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.3e-29 133.3 99 63.6
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 3.0e-29 132.9 97 66.0
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 6.6e-29 131.7 97 66.0
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 8.6e-29 131.3 90 68.9
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 1.5e-28 130.6 99 66.7
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 2.5e-28 129.8 92 70.7
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.3e-28 129.4 99 64.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 3.3e-28 129.4 92 69.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 3.3e-28 129.4 97 66.0
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.3e-28 129.4 97 67.0
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.3e-28 129.4 97 67.0
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 3.3e-28 129.4 97 67.0
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 3.3e-28 129.4 100 69.0
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 3.3e-28 129.4 100 69.0
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.3e-28 129.0 90 66.7
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 4.3e-28 129.0 99 65.7
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.3e-28 129.0 90 66.7
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 4.3e-28 129.0 92 69.6
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 7.3e-28 128.3 95 65.3
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 9.5e-28 127.9 90 65.6
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.1e-27 126.7 100 62.0
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 2.1e-27 126.7 112 58.9
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.8e-27 126.3 86 70.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.6e-27 125.9 98 65.3
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 4.7e-27 125.6 102 59.8
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 8.1e-27 124.8 99 60.6
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 2.6e-25 119.8 111 56.8
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 2.6e-25 119.8 111 56.8
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.4e-25 119.4 109 56.0
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 4.4e-25 119.0 94 64.9
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 5.8e-25 118.6 101 60.4
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 7.5e-25 118.2 109 59.6
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 9.8e-25 117.9 86 61.6
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.3e-24 117.5 109 59.6
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.3e-24 117.5 93 60.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.7e-24 117.1 96 63.5
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.7e-24 117.1 105 56.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.2e-24 116.7 97 56.7
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 3.7e-24 115.9 108 56.5
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 6.4e-24 115.2 109 56.9
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 8.3e-24 114.8 115 54.8
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.1e-23 114.4 107 55.1
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.9e-23 113.6 94 62.8
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.4e-23 113.2 93 58.1
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 5.4e-23 112.1 94 60.6
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 5.4e-23 112.1 104 54.8
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 9.2e-23 111.3 108 58.3
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.2e-22 110.9 94 59.6
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.2e-22 110.9 96 58.3
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.2e-22 110.9 99 58.6
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.2e-22 110.9 97 59.8
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.6e-22 110.5 94 59.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.6e-22 110.5 94 59.6
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.1e-22 110.2 95 60.0
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.1e-22 110.2 96 63.5
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 3.5e-22 109.4 107 57.0
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 4.6e-22 109.0 95 58.9
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.0e-21 107.8 98 62.2
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.3e-21 107.5 96 55.2
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.7e-21 107.1 101 53.5
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.7e-21 107.1 101 59.4
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 2.3e-21 106.7 92 58.7
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 2.3e-21 106.7 96 59.4
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.3e-21 106.7 96 59.4
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 2.3e-21 106.7 91 62.6
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 2.3e-21 106.7 95 61.1
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 3.0e-21 106.3 93 54.8
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 3.9e-21 105.9 101 58.4
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 3.9e-21 105.9 92 60.9
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 3.9e-21 105.9 98 59.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 5.1e-21 105.5 96 58.3
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 5.1e-21 105.5 91 63.7
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 5.1e-21 105.5 93 62.4
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 6.6e-21 105.1 96 58.3
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 6.6e-21 105.1 96 59.4
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 6.6e-21 105.1 96 59.4
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 8.6e-21 104.8 106 52.8
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.1e-20 104.4 102 55.9
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.1e-20 104.4 102 55.9
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.5e-20 103.2 96 58.3
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 2.5e-20 103.2 96 57.3
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 2.5e-20 103.2 94 60.6
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.3e-20 102.8 95 60.0
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 4.3e-20 102.4 90 55.6
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 5.6e-20 102.1 96 57.3
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 5.6e-20 102.1 96 57.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 5.6e-20 102.1 98 58.2
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.6e-19 100.5 101 51.5
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.6e-19 100.5 102 54.9
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 2.1e-19 100.1 102 52.9
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.1e-19 100.1 107 52.3
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.1e-19 100.1 96 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.8e-19 99.8 102 52.9
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.8e-19 99.8 97 50.5
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 3.6e-19 99.4 96 57.3
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 8.1e-19 98.2 101 49.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 8.1e-19 98.2 101 49.5
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.4e-18 97.4 87 64.4
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.8e-18 95.1 87 63.2
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.3e-16 90.9 97 48.5
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 2.9e-16 89.7 82 53.7
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 3.8e-16 89.4 97 45.4
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 3.8e-16 89.4 97 49.5
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 6.4e-16 88.6 97 49.5
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 3.0e-13 79.7 90 44.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 4.0e-10 69.3 41 73.2
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 2.1e-06 57.0 156 26.9


User provided reference genes

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