Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.3e-96 355.5 179 100.0
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.6e-52 209.9 187 65.2
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.7e-52 209.1 186 65.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.7e-51 204.5 201 60.7
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 9.0e-48 194.1 187 62.0
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.9e-46 189.1 187 61.0
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 1.7e-41 173.3 114 82.5
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-37 159.5 202 52.5
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-37 159.5 202 52.5
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-36 156.8 202 52.0
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-36 156.8 202 52.0
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 3.8e-30 135.6 143 59.4
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 3.2e-21 105.9 190 40.5
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 5.5e-21 105.1 189 39.7
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.2e-21 104.8 191 38.7
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 9.4e-21 104.4 187 41.2
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.7e-20 102.8 119 52.1
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.7e-20 102.8 119 52.1
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 1.0e-19 100.9 186 39.2
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 5.2e-19 98.6 118 49.2
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.4e-18 95.5 190 37.4
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 4.4e-18 95.5 190 37.9
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.3e-17 94.0 188 36.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 6.3e-17 91.7 191 36.6
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 8.3e-17 91.3 197 36.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 2.4e-16 89.7 190 36.3
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 4.1e-16 89.0 176 39.2
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 9.1e-16 87.8 178 37.1
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.3e-14 84.0 116 45.7
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 2.2e-14 83.2 197 34.0
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 3.8e-14 82.4 186 36.6
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 8.5e-14 81.3 209 34.4
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 1.1e-13 80.9 196 33.7
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 2.5e-13 79.7 112 43.8
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 3.2e-13 79.3 179 35.2
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 3.2e-13 79.3 119 44.5
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 3.2e-13 79.3 119 44.5
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 4.2e-13 79.0 216 32.4
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 7.2e-13 78.2 117 42.7
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 9.4e-13 77.8 119 45.4
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 2.7e-12 76.3 119 41.2
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 1.4e-11 73.9 209 34.0
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 1.4e-11 73.9 140 40.0
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 3.0e-11 72.8 190 33.2
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 4.0e-11 72.4 101 46.5
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 5.2e-11 72.0 140 40.0
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 2.0e-10 70.1 117 39.3
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 9.8e-10 67.8 118 41.5
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 9.8e-10 67.8 118 40.7
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.2e-09 66.6 186 36.0
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.2e-09 66.6 186 36.0
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 2.8e-09 66.2 113 43.4
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 3.7e-09 65.9 212 30.2
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 4.9e-09 65.5 205 30.7
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 4.9e-09 65.5 113 43.4
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 6.3e-09 65.1 127 42.5
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 8.3e-09 64.7 118 38.1
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.4e-08 63.9 128 39.1
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 1.4e-08 63.9 127 41.7
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 1.4e-08 63.9 114 40.4
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 1.8e-08 63.5 207 29.0
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 1.8e-08 63.5 209 31.1
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 2.4e-08 63.2 192 30.7
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 4.1e-08 62.4 122 41.8
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 4.1e-08 62.4 108 38.0
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.1e-08 62.4 113 42.5
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 7.0e-08 61.6 184 34.8
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.2e-07 60.8 77 53.2
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 1.2e-07 60.8 51 64.7
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 1.6e-07 60.5 208 29.3
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 2.0e-07 60.1 108 38.0
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 2.7e-07 59.7 206 28.6
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 5.9e-07 58.5 206 28.2
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.9e-07 58.5 113 40.7
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 7.7e-07 58.2 208 27.9
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 7.7e-07 58.2 208 27.9
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 7.7e-07 58.2 140 35.0
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.0e-06 57.8 115 36.5
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.3e-06 57.4 115 36.5
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 1.3e-06 57.4 206 28.2
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 1.3e-06 57.4 208 28.4
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 1.7e-06 57.0 180 33.3
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 5.0e-06 55.5 65 50.8
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 6.6e-06 55.1 178 32.6
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 8.6e-06 54.7 114 40.4


User provided reference genes

Program Settings