Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 8.7e-116 420.2 201 100.0
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.4e-100 369.8 201 90.0
FvH4_5g18461 Fragaria vesca HOM05D004529 ORTHO05D013847 1.6e-48 196.8 113 88.5
FAN08G0131 Fragaria x ananassa HOM05D004529 ORTHO05D013847 3.0e-47 192.6 97 99.0
FAN18G3124 Fragaria x ananassa HOM05D004529 ORTHO05D013847 6.0e-40 168.3 85 98.8
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.5e-38 163.7 80 97.5
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 1.2e-21 107.5 47 100.0
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.1e-20 104.4 47 97.9
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 5.8e-19 98.6 47 95.7
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 5.8e-19 98.6 47 95.7
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.5e-16 89.4 47 87.2
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.5e-16 89.4 47 87.2
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.3e-15 87.4 47 87.2
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.3e-15 87.4 51 80.4
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.7e-15 87.0 43 90.7
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.7e-15 87.0 47 87.2
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 2.3e-15 86.7 47 85.1
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.9e-15 85.9 51 80.4
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.9e-15 85.9 51 80.4
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 3.9e-15 85.9 47 85.1
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 3.9e-15 85.9 47 85.1
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 6.6e-15 85.1 46 87.0
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 6.6e-15 85.1 52 76.9
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.6e-15 85.1 47 85.1
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 8.7e-15 84.7 84 56.0
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 8.7e-15 84.7 47 85.1
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 8.7e-15 84.7 47 85.1
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 8.7e-15 84.7 43 86.0
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.1e-14 84.3 49 81.6
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.5e-14 84.0 47 85.1
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.5e-14 84.0 47 85.1
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.5e-14 84.0 47 85.1
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.9e-14 83.6 46 84.8
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.9e-14 83.6 47 83.0
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 2.5e-14 83.2 46 84.8
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.5e-14 83.2 47 85.1
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.5e-14 83.2 49 79.6
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.5e-14 83.2 46 84.8
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 3.3e-14 82.8 43 83.7
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 3.3e-14 82.8 45 80.0
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 4.3e-14 82.4 47 83.0
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 4.3e-14 82.4 47 83.0
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 4.3e-14 82.4 47 83.0
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 5.6e-14 82.0 46 84.8
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 5.6e-14 82.0 49 79.6
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 5.6e-14 82.0 47 83.0
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.6e-14 82.0 47 83.0
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 5.6e-14 82.0 47 80.9
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 7.3e-14 81.6 47 83.0
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 7.3e-14 81.6 45 82.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 7.3e-14 81.6 47 83.0
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.6e-14 81.3 51 76.5
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 9.6e-14 81.3 47 78.7
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 9.6e-14 81.3 47 74.5
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 9.6e-14 81.3 52 75.0
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 1.3e-13 80.9 47 83.0
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-13 80.9 46 82.6
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.3e-13 80.9 44 79.5
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.3e-13 80.9 46 82.6
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.3e-13 80.9 43 81.4
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.3e-13 80.9 46 82.6
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.3e-13 80.9 47 83.0
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.6e-13 80.5 42 85.7
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 2.1e-13 80.1 47 76.6
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 2.1e-13 80.1 46 82.6
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.8e-13 79.7 47 83.0
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 2.8e-13 79.7 46 82.6
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.8e-13 79.7 47 80.9
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 2.8e-13 79.7 43 83.7
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 3.6e-13 79.3 47 80.9
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 3.6e-13 79.3 47 80.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.8e-13 79.0 46 78.3
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 4.8e-13 79.0 47 76.6
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 4.8e-13 79.0 43 86.0
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 4.8e-13 79.0 47 80.9
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 6.2e-13 78.6 47 76.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 6.2e-13 78.6 45 80.0
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 6.2e-13 78.6 47 76.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 74.5
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.1e-13 78.2 47 76.6
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.1e-12 77.8 47 76.6
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.1e-12 77.8 47 76.6
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.1e-12 77.8 47 76.6
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.4e-12 77.4 47 76.6
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 1.4e-12 77.4 47 76.6
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.8e-12 77.0 42 83.3
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-12 76.6 46 78.3
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-12 76.6 46 78.3
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-12 76.6 46 78.3
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 2.4e-12 76.6 46 78.3
FAN21G2570 Fragaria x ananassa HOM05D011847 ORTHO05D013847 2.4e-12 76.6 58 58.6
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.1e-12 76.3 42 83.3
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 5.3e-12 75.5 41 82.9
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.9e-12 75.1 47 78.7
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-11 74.3 47 68.1
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.5e-11 73.9 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.4e-11 72.8 42 76.2
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 3.4e-11 72.8 59 61.0
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 7.6e-11 71.6 47 74.5
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 9.9e-11 71.2 47 72.3
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-10 70.1 40 72.5
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-10 70.1 40 72.5
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 2.2e-10 70.1 38 76.3
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.2e-10 70.1 52 69.2
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.9e-10 69.7 46 73.9
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.1e-09 67.8 47 66.0
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 1.9e-09 67.0 68 54.4
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.9e-09 67.0 38 78.9
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-09 66.6 39 69.2
Haze_01924 Corylus avellana HOM05D000052 ORTHO05D000046 4.2e-09 65.9 68 48.5
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 4.2e-09 65.9 36 77.8
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 9.3e-09 64.7 44 65.9
AUR62040794 Chenopodium quinoa HOM05D011847 ORTHO05D013847 9.3e-09 64.7 79 40.5
MBI02_g46287_MAGBIO Magnolia biondii HOM05D011847 ORTHO05D013847 9.3e-09 64.7 70 48.6
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.6e-08 63.9 55 52.7
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 6.0e-08 62.0 42 61.9
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 7.9e-08 61.6 47 55.3
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.9e-08 61.6 47 55.3
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.3e-07 60.8 47 55.3
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 2.3e-07 60.1 46 52.2
Haze_01942 Corylus avellana HOM05D004529 ORTHO05D164069 3.9e-07 59.3 62 46.8
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 6.7e-07 58.5 32 75.0
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 6.7e-07 58.5 47 53.2
Haze_06135 Corylus avellana HOM05D011847 ORTHO05D013847 1.1e-06 57.8 64 43.8
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.5e-06 57.4 38 63.2
Haze_01938 Corylus avellana HOM05D004529 ORTHO05D013847 3.3e-06 56.2 69 37.7


User provided reference genes

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