Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1157.5 610 100.0
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 0.0e+00 1149.4 610 99.2
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1122.8 621 96.0
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1122.5 621 96.1
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1121.3 619 96.1
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 0.0e+00 1113.6 610 95.7
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 4.1e-294 1014.2 610 87.5
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 2.8e-290 1001.5 609 85.6
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 1.4e-289 999.2 609 84.1
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 1.8e-289 998.8 609 84.1
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 8.9e-289 996.5 609 85.2
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 5.8e-288 993.8 610 80.3
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.3e-287 992.6 610 80.2
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 1.3e-287 992.6 609 84.4
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 2.9e-287 991.5 610 80.8
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.1e-286 989.6 610 80.8
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 5.4e-286 987.3 610 82.3
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.6e-285 985.7 610 80.5
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.9e-283 978.8 606 77.2
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.2e-282 976.1 610 80.7
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 2.4e-281 971.8 610 80.7
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 4.0e-281 971.1 610 78.7
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 6.9e-281 970.3 609 78.7
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 2.2e-279 965.3 609 78.3
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 3.8e-279 964.5 612 82.0
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.4e-278 961.8 609 78.2
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 4.2e-278 961.1 610 80.8
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 9.3e-278 959.9 610 81.0
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.6e-277 959.1 601 78.0
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 1.6e-277 959.1 609 77.7
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.1e-277 958.7 610 82.0
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 2.7e-277 958.4 606 78.5
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 6.0e-277 957.2 608 78.0
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.7e-276 955.7 637 75.7
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 1.7e-276 955.7 611 80.5
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.0e-276 954.9 604 79.3
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.0e-276 954.9 604 79.3
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 8.7e-276 953.4 606 78.4
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.1e-275 953.0 610 80.8
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 9.6e-275 949.9 606 77.9
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 2.8e-274 948.3 605 77.4
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 3.6e-274 948.0 610 77.4
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 6.2e-274 947.2 606 79.7
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 8.1e-274 946.8 622 79.4
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 1.4e-273 946.0 611 80.2
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.4e-273 946.0 595 76.3
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 4.0e-273 944.5 623 76.4
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 6.9e-273 943.7 609 73.6
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.2e-272 943.0 610 77.5
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.2e-272 943.0 607 77.3
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 4.5e-272 941.0 609 80.6
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 5.8e-272 940.6 622 76.7
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 1.3e-271 939.5 610 77.0
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 1.7e-271 939.1 607 76.9
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 1.7e-271 939.1 610 77.2
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 6.4e-271 937.2 633 75.2
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.1e-270 936.4 608 78.3
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 2.4e-270 935.3 611 76.3
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 4.2e-270 934.5 610 77.7
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 4.2e-270 934.5 612 79.4
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 7.1e-270 933.7 610 76.6
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 4.6e-269 931.0 606 77.6
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 3.9e-268 927.9 610 78.4
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 4.3e-267 924.5 661 74.0
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 1.6e-266 922.5 610 73.9
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 3.1e-265 918.3 616 78.1
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.0e-265 917.9 608 75.5
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 4.0e-265 917.9 605 79.2
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 9.0e-265 916.8 609 74.5
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 5.8e-264 914.1 610 75.6
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 9.9e-264 913.3 609 75.7
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.3e-263 912.9 609 75.4
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.8e-263 911.4 609 75.2
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 4.9e-263 911.0 611 73.5
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 1.9e-262 909.1 610 74.4
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 2.3e-260 902.1 609 74.4
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 2.3e-260 902.1 610 74.4
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.0e-260 901.7 607 72.0
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 2.5e-259 898.7 607 73.5
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 5.6e-259 897.5 609 74.5
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 5.6e-259 897.5 593 74.5
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 7.4e-259 897.1 610 73.9
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 1.3e-258 896.3 610 71.8
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 1.6e-258 896.0 611 75.6
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.6e-258 896.0 610 70.8
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 3.7e-258 894.8 609 74.2
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 1.4e-257 892.9 608 74.5
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 4.0e-257 891.3 608 74.2
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 4.0e-257 891.3 608 75.5
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 7.6e-256 887.1 608 74.0
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 7.6e-256 887.1 608 74.0
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.3e-255 886.3 610 69.3
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 4.9e-255 884.4 610 68.9
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.4e-254 882.9 610 70.7
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 1.4e-254 882.9 610 73.3
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 3.2e-254 881.7 608 73.2
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 9.3e-254 880.2 611 73.6
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 3.5e-253 878.2 611 70.7
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 3.5e-253 878.2 607 72.8
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.8e-252 875.9 611 72.0
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 4.3e-251 871.3 623 69.0
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.3e-250 869.8 612 71.9
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 3.7e-250 868.2 610 70.8
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 6.3e-250 867.5 610 70.3
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 2.0e-248 862.4 682 63.3
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 2.2e-247 859.0 688 63.4
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.2e-247 859.0 611 70.7
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 3.8e-247 858.2 690 67.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 3.8e-247 858.2 607 69.0
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.2e-246 855.1 604 70.4
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 6.1e-245 850.9 611 67.8
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 1.4e-244 849.7 611 68.1
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.5e-243 845.5 592 71.1
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.2e-239 832.4 613 70.6
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 5.0e-239 831.2 563 76.6
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 3.2e-238 828.6 613 69.3
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.2e-238 828.6 613 68.8
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.2e-237 826.6 613 68.8
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.2e-237 826.6 613 71.0
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 3.6e-237 825.1 608 69.4
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 6.1e-237 824.3 618 68.3
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 6.1e-237 824.3 618 68.3
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 2.3e-236 822.4 645 65.4
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 2.3e-236 822.4 613 68.4
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 1.1e-235 820.1 618 68.0
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.6e-235 818.9 618 67.8
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 3.3e-235 818.5 611 68.4
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.2e-234 815.8 613 68.4
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.4e-233 813.1 613 68.0
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.6e-229 798.5 608 67.9
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.3e-227 792.0 524 74.4
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 5.7e-227 791.2 524 74.2
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 1.2e-200 703.7 471 78.6
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 3.6e-197 692.2 478 72.2
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 2.6e-195 686.0 606 56.6
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 1.3e-186 657.1 612 52.1
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.9e-182 643.3 415 78.8
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 3.9e-175 619.0 385 80.5
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 7.1e-169 598.2 611 55.6
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 1.1e-166 590.9 609 49.6
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 6.2e-165 585.1 426 70.4
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 2.2e-154 550.1 427 67.9
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 3.9e-143 512.7 480 57.3
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 3.8e-122 443.0 324 67.0
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 1.2e-120 438.0 283 76.0
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 6.1e-120 435.6 486 54.7
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 2.6e-118 430.3 353 60.3
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 1.5e-113 414.5 350 61.1
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 4.2e-97 359.8 647 36.8
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.6e-91 341.3 185 83.8
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 5.0e-90 336.3 621 40.3
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 2.9e-85 320.5 222 74.3
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 3.1e-79 300.4 506 37.5
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 9.2e-68 262.3 166 83.7
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 3.5e-67 260.4 166 81.9
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 1.1e-65 255.4 164 83.5
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 7.3e-65 252.7 164 82.9
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 6.6e-58 229.6 131 81.7
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 1.1e-57 228.8 130 80.0
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 8.1e-56 222.6 131 80.2
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 1.8e-55 221.5 128 80.5
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 4.0e-55 220.3 171 70.2
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 6.9e-47 193.0 131 74.0
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 2.1e-40 171.4 100 83.0
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 2.4e-36 157.9 161 51.6
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 1.1e-25 122.5 131 52.7
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 3.3e-25 120.9 95 60.0
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 2.2e-21 108.2 81 64.2
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 1.9e-20 105.1 182 37.4
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 5.1e-18 97.1 54 79.6
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 1.5e-17 95.5 221 31.7
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.9e-17 95.1 73 65.8
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 9.7e-17 92.8 73 64.4
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.0e-14 85.1 53 71.7
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 2.1e-11 75.1 49 69.4
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 6.1e-11 73.6 60 58.3
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.5e-09 68.9 49 67.3
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 2.6e-06 58.2 219 20.1
DCAR_030291 Daucus carota HOM05D001610 ORTHO05D001585 5.9e-06 57.0 178 25.8
Carub.0008s1480 Capsella rubella HOM05D002303 ORTHO05D007639 7.7e-06 56.6 178 26.4


User provided reference genes

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