Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1134.8 646 100.0
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 0.0e+00 1112.1 646 98.5
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1109.7 646 98.3
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1106.7 646 98.1
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 0.0e+00 1102.0 646 97.8
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 2.0e-307 1058.5 646 93.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.5e-307 1057.7 646 93.5
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 5.2e-255 884.4 651 78.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 7.3e-249 864.0 651 77.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.4e-230 802.0 616 71.3
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 2.2e-229 799.3 649 70.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 2.5e-228 795.8 651 70.4
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.9e-227 790.8 654 71.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.9e-226 788.5 630 71.4
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 6.2e-224 781.2 650 69.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 8.2e-224 780.8 650 70.0
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 8.2e-224 780.8 654 66.7
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 5.3e-223 778.1 574 76.8
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.9e-223 777.7 615 69.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.5e-222 775.0 650 68.9
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 8.4e-221 770.8 651 68.0
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.4e-220 770.0 654 69.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.4e-220 770.0 650 67.1
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.9e-220 769.6 654 69.9
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.1e-219 766.1 686 64.0
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.1e-219 766.1 615 68.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.1e-219 766.1 693 68.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.5e-219 765.4 655 65.5
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.5e-219 765.4 650 70.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.0e-218 763.8 655 69.0
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.0e-218 763.8 615 70.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.0e-218 763.8 615 66.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.3e-218 763.5 653 69.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.3e-218 762.7 650 65.8
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 3.0e-218 762.3 654 68.8
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.5e-217 760.0 654 67.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-217 760.0 651 65.7
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.9e-217 759.6 650 68.8
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.7e-217 758.1 651 65.7
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.4e-217 757.7 617 68.7
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.3e-216 754.6 617 67.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.8e-215 753.1 654 67.9
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.3e-215 751.5 617 67.1
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 6.9e-215 751.1 660 65.3
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.4e-214 748.8 651 69.6
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.0e-213 747.3 662 66.6
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-213 746.9 654 67.3
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-213 746.5 651 66.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.9e-213 745.7 622 66.2
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.9e-213 745.7 614 67.4
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 8.5e-213 744.2 649 64.9
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.1e-212 743.8 620 68.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.1e-212 743.8 654 67.0
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.9e-212 743.0 650 67.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.5e-212 742.7 664 63.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.5e-212 742.7 647 67.7
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.2e-211 740.3 640 65.0
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 6.1e-211 738.0 650 64.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 7.9e-211 737.6 638 64.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 3.0e-210 735.7 652 66.7
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-210 735.7 648 67.9
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.1e-209 733.8 640 64.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 5.7e-209 731.5 655 64.3
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 4.1e-207 725.3 657 63.3
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 5.3e-207 724.9 650 64.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.5e-206 723.4 649 63.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.6e-206 722.6 732 61.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 5.9e-206 721.5 615 65.0
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 7.7e-206 721.1 651 63.9
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.3e-205 720.3 649 64.1
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-205 720.3 648 66.5
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 6.5e-205 718.0 606 65.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 4.2e-204 715.3 648 63.0
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-204 715.3 648 63.0
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 4.2e-204 715.3 648 63.0
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.4e-204 714.1 656 63.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.2e-203 713.8 636 62.7
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.6e-203 713.4 609 64.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.7e-203 712.6 645 61.9
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.6e-203 712.2 640 63.1
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.1e-203 711.4 663 64.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-202 710.3 645 62.3
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.8e-202 709.9 660 62.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.8e-202 709.9 650 63.8
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.5e-201 706.8 677 60.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 9.7e-201 704.1 653 62.3
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 3.7e-200 702.2 645 62.5
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-199 700.7 663 63.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.8e-199 699.9 663 64.7
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.5e-198 696.8 623 61.8
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.6e-198 696.0 624 62.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-196 690.6 651 61.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 3.2e-196 689.1 622 62.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 3.6e-195 685.6 617 65.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.0e-194 684.1 619 62.8
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.1e-191 674.1 584 63.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.4e-191 672.9 656 59.6
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 7.0e-191 671.4 540 65.0
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.5e-189 664.5 664 63.6
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.6e-185 652.9 556 70.7
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.7e-184 649.0 655 60.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 9.1e-183 644.4 582 63.9
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 4.5e-182 642.1 539 67.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.9e-182 641.7 651 58.8
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.1e-180 637.5 660 57.4
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 8.0e-179 631.3 652 58.3
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-177 627.5 504 66.9
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.7e-176 623.6 648 56.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 8.6e-173 611.3 517 70.0
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-170 604.4 642 57.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.0e-170 604.4 654 56.0
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 5.9e-166 588.6 645 55.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 4.9e-160 568.9 543 62.6
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.9e-159 567.0 651 53.6
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.9e-159 567.0 631 53.7
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.2e-158 564.3 515 65.0
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-154 550.1 468 73.7
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.9e-151 540.4 455 74.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.3e-148 529.3 464 60.8
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 4.3e-140 502.7 631 50.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.1e-134 483.8 502 57.8
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.8e-131 473.4 649 45.5
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.6e-129 465.3 453 62.3
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.3e-124 449.9 556 50.7
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.4e-122 444.5 672 46.9
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.8e-122 444.1 432 57.2
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.1e-122 443.4 663 42.5
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-118 430.6 342 74.0
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.2e-105 388.3 652 41.1
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-103 381.3 339 68.7
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 7.9e-102 375.6 368 56.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.2e-99 365.5 634 41.3
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 5.5e-95 352.8 418 49.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.5e-89 333.2 352 63.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 5.0e-64 250.0 225 60.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 5.5e-63 246.5 247 59.1
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.0e-60 238.0 697 32.6
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 6.3e-59 233.0 180 75.6
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.1e-58 232.3 190 64.2
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 6.6e-56 223.0 325 47.4
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.1e-54 218.0 188 63.8
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.6e-52 211.1 189 56.1
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 6.4e-51 206.5 741 29.8
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.6e-49 200.3 168 60.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.9e-48 197.2 173 71.1
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.5e-44 185.3 640 30.3
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.0e-44 184.9 155 61.3
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 5.8e-44 183.3 155 61.3
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.4e-42 176.8 151 63.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 9.5e-39 166.0 158 53.8
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.1e-37 162.5 136 69.1
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 4.0e-37 160.6 158 51.9
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.8e-37 159.8 128 67.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 8.9e-37 159.5 117 70.9
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-29 134.8 188 41.0
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.4e-28 131.0 150 50.7
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.8e-27 127.5 148 50.7
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 4.3e-23 114.0 92 66.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 4.3e-23 114.0 92 66.3
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.3e-23 114.0 92 66.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-21 109.4 90 58.9
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-20 105.1 101 58.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 4.4e-20 104.0 92 59.8
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-17 95.5 91 58.2
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.0e-17 93.6 75 57.3
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.1e-16 90.5 72 58.3
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.3e-15 87.8 110 63.6
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 3.3e-15 87.8 79 50.6
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 4.3e-15 87.4 79 68.4
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 7.3e-15 86.7 72 52.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.1e-14 85.1 76 65.8
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.4e-13 82.4 121 48.8
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 9.0e-13 79.7 82 48.8
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 3.8e-11 74.3 72 48.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.3e-10 69.7 61 62.3
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-08 66.2 49 59.2
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.6e-07 59.7 160 36.9
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 4.8e-06 57.4 62 46.8
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 8.1e-06 56.6 48 58.3


User provided reference genes

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