Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1880.5 1194 100.0
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1297.0 922 93.5
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 0.0e+00 1293.1 917 92.7
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 0.0e+00 1287.7 918 93.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 0.0e+00 1109.4 945 80.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.2e-310 1070.1 764 92.9
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.6e-204 717.6 968 60.3
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 5.8e-199 699.1 955 58.7
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.9e-198 696.8 880 64.0
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.1e-197 694.9 956 59.3
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.1e-197 693.0 779 67.3
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.7e-196 690.3 775 67.2
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-194 684.5 891 63.0
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.5e-194 683.7 951 61.2
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 5.6e-194 682.6 893 59.1
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.5e-186 657.9 881 59.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.7e-185 652.9 913 59.5
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 4.4e-183 646.4 925 58.1
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.9e-181 641.0 777 63.2
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.7e-180 637.1 850 60.5
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 3.9e-179 633.3 999 53.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 8.1e-177 625.5 954 55.6
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.7e-174 617.8 901 57.5
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.2e-172 611.7 853 49.8
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.0e-171 608.6 899 59.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.3e-171 607.4 902 56.8
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 8.7e-171 605.5 978 56.4
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.1e-170 605.1 789 62.5
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.5e-170 604.0 888 58.7
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.3e-169 601.7 1066 49.6
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.8e-167 592.8 931 55.5
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.7e-166 591.3 931 55.4
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.2e-166 590.9 920 53.7
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.4e-165 588.2 784 57.4
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 3.2e-165 587.0 896 53.5
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 9.3e-165 585.5 797 56.2
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.0e-163 582.0 781 58.3
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 6.7e-163 579.3 915 54.8
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 7.4e-162 575.9 806 53.3
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.6e-162 575.5 914 54.8
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.1e-161 574.3 898 53.1
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.1e-160 572.0 774 60.9
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.8e-160 571.2 1024 55.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 5.3e-160 569.7 1001 53.2
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 5.3e-160 569.7 797 58.6
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 5.3e-160 569.7 884 54.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 6.9e-160 569.3 979 47.5
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.4e-159 567.0 886 56.1
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.0e-158 565.5 951 54.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.4e-157 561.6 816 55.8
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 7.1e-157 559.3 780 61.8
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.9e-154 551.2 902 49.8
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.3e-154 550.4 936 50.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 2.1e-153 547.7 782 59.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.5e-149 534.3 936 54.3
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 7.2e-149 532.7 873 55.0
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.6e-148 531.6 932 51.8
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.7e-148 530.8 799 51.3
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.6e-148 530.0 943 48.8
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 7.9e-148 529.3 919 49.6
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 7.9e-148 529.3 963 46.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 3.0e-147 527.3 778 56.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 3.9e-147 526.9 937 49.6
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.5e-146 524.2 924 52.3
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.7e-146 523.1 878 50.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 9.7e-146 522.3 917 51.0
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 3.7e-145 520.4 924 53.8
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 8.2e-145 519.2 932 54.4
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 8.2e-145 519.2 783 55.4
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.8e-144 518.1 956 49.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.4e-144 517.7 937 51.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 5.3e-144 516.5 891 57.8
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 9.1e-144 515.8 947 54.4
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 4.5e-143 513.5 842 51.3
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 5.9e-143 513.1 932 54.0
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.7e-142 511.5 766 57.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.8e-142 510.4 847 51.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 3.8e-142 510.4 962 50.1
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 6.5e-142 509.6 856 51.5
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.5e-142 509.6 896 49.8
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.6e-140 505.0 995 45.7
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 3.6e-140 503.8 909 50.3
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.1e-140 503.1 917 53.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.0e-139 502.3 806 53.7
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.0e-138 498.0 846 54.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.3e-138 497.3 782 55.2
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 7.4e-138 496.1 942 51.1
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.8e-137 494.2 928 51.3
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.8e-137 494.2 928 51.3
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 6.3e-137 493.0 1005 51.0
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 5.3e-136 490.0 883 50.6
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 2.0e-135 488.0 790 54.4
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.6e-135 487.6 896 50.0
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 7.7e-135 486.1 894 50.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.1e-133 482.3 959 49.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-133 481.9 950 48.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 3.2e-133 480.7 890 50.9
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.2e-133 480.7 288 88.9
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.2e-133 480.3 775 52.3
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 7.2e-133 479.6 793 53.1
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-129 468.8 736 50.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 3.7e-129 467.2 972 50.3
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 6.3e-129 466.5 918 52.5
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.7e-127 459.5 258 93.0
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 5.0e-126 456.8 766 49.1
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.8e-123 448.4 796 48.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 5.2e-123 446.8 907 42.2
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 8.8e-123 446.0 776 53.1
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.2e-122 445.7 790 52.7
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 2.2e-121 441.4 793 55.1
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.0e-118 430.3 862 50.2
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.5e-117 426.8 966 47.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.4e-115 422.2 909 43.0
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.6e-114 417.9 791 45.0
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 4.8e-113 413.7 950 45.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.1e-112 412.5 873 50.6
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 4.5e-111 407.1 901 45.2
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 8.9e-99 366.3 887 46.6
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.4e-96 359.0 725 51.7
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 3.6e-92 344.4 781 49.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.6e-87 328.9 770 43.6
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.7e-87 328.2 849 48.1
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 4.6e-87 327.4 828 45.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.2e-73 282.0 567 55.7
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.1e-69 269.6 284 57.0
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.5e-69 268.5 370 47.0
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 6.4e-65 253.8 284 57.4
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.1e-60 238.8 383 44.6
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.4e-59 236.1 821 40.3
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.9e-57 227.6 341 46.0
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.4e-56 225.3 235 55.3
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.2e-48 198.4 233 58.4
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.1e-43 181.8 130 69.2
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-41 176.4 281 49.8
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.2e-32 144.1 90 83.3
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 6.7e-30 137.5 158 50.6
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.0e-25 121.3 71 84.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.5e-21 109.8 148 43.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 5.7e-21 107.8 71 76.1
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.1e-19 103.6 196 40.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.2e-18 100.1 154 39.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.0e-18 99.4 218 32.1
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 4.7e-15 88.2 129 37.2
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.2e-14 84.7 92 53.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.6e-13 82.4 72 62.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 9.1e-11 73.9 97 39.2
MD16G1091800 Malus domestica HOM05D057391 ORTHO05D036519 2.0e-10 72.8 109 51.4
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-09 70.1 134 32.8
MD13G1091400 Malus domestica HOM05D057391 ORTHO05D036519 8.5e-09 67.4 119 47.1
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.5e-08 65.9 113 46.9
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.0e-06 60.5 134 38.8
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 2.3e-06 59.3 87 33.3
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 2.3e-06 59.3 87 33.3
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.0e-06 58.9 92 45.7
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 4.0e-06 58.5 71 39.4
TAR628G0751 Trochodendron aralioides HOM05D004266 ORTHO05D005151 5.2e-06 58.2 77 36.4
Psat6g189240 Pisum sativum HOM05D004266 ORTHO05D005151 6.7e-06 57.8 91 36.3
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 6.7e-06 57.8 70 37.1
Sed0023525 Sechium edule HOM05D004266 ORTHO05D005151 8.8e-06 57.4 77 36.4


User provided reference genes

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