Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1804 Fragaria x ananassa HOM05D001876 ORTHO05D022728 1.3e-58 229.6 118 100.0
FvH4_3g42820 Fragaria vesca HOM05D001876 ORTHO05D002002 1.9e-09 66.2 52 69.2
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 2.4e-09 65.9 58 62.1
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 2.4e-09 65.9 58 62.1
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 2.4e-09 65.9 58 62.1
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 2.4e-09 65.9 58 58.6
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 4.2e-09 65.1 58 60.3
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.5e-09 64.7 58 58.6
CSS0030826 Camellia sinensis var. sinensis HOM05D001876 ORTHO05D002002 5.5e-09 64.7 58 58.6
Cc05_g15500 Coffea canephora HOM05D001876 ORTHO05D002002 1.2e-08 63.5 58 60.3
vmacro11629 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 1.2e-08 63.5 58 56.9
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.6e-08 63.2 58 56.9
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-08 62.8 44 59.1
Sabra16G0007100 Salix brachista HOM05D001876 ORTHO05D002002 2.1e-08 62.8 59 55.9
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 2.7e-08 62.4 58 58.6
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.5e-08 62.0 57 56.1
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 4.6e-08 61.6 59 52.5
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 4.6e-08 61.6 53 64.2
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 4.6e-08 61.6 58 56.9
Solyc07g021140.1 Solanum lycopersicum HOM05D001876 ORTHO05D002002 4.6e-08 61.6 58 56.9
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.6e-08 61.6 58 56.9
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 7.9e-08 60.8 52 63.5
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 55.2
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 53.4
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 53.4
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 1.0e-07 60.5 71 47.9
SalBow8G1221 Salvia bowleyana HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 55.2
SalBow8G5543 Salvia bowleyana HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 55.2
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.0e-07 60.5 58 55.2
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 1.3e-07 60.1 52 61.5
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.3e-07 60.1 52 61.5
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.3e-07 60.1 52 61.5
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.3e-07 60.1 52 61.5
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 1.3e-07 60.1 58 56.9
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 1.8e-07 59.7 58 51.7
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 1.8e-07 59.7 58 56.9
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 1.8e-07 59.7 59 54.2
Sopen02g009040 Solanum pennellii HOM05D001876 ORTHO05D002002 1.8e-07 59.7 60 51.7
Migut.H01726 Erythranthe guttata HOM05D001876 ORTHO05D002002 2.3e-07 59.3 58 51.7
Thhalv10019903m.g Eutrema salsugineum HOM05D001876 ORTHO05D002002 2.3e-07 59.3 58 55.2
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 2.3e-07 59.3 71 49.3
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 2.3e-07 59.3 58 53.4
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 3.0e-07 58.9 58 53.4
FAN21G3831 Fragaria x ananassa HOM05D000027 ORTHO05D000090 3.0e-07 58.9 38 71.1
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 3.0e-07 58.9 58 58.6
PGR004G0187 Punica granatum HOM05D001876 ORTHO05D002002 3.0e-07 58.9 57 50.9
Phvul.006G135300 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 3.9e-07 58.5 62 48.4
Rhsim07G0051800 Rhododendron simsii HOM05D001876 ORTHO05D002002 3.9e-07 58.5 89 42.7
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 3.9e-07 58.5 58 55.2
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 5.1e-07 58.2 58 53.4
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.1e-07 58.2 71 47.9
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 5.1e-07 58.2 71 46.5
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 5.1e-07 58.2 52 63.5
CARHR087910 Cardamine hirsuta HOM05D001876 ORTHO05D002002 6.7e-07 57.8 71 49.3
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 6.7e-07 57.8 58 55.2
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 6.7e-07 57.8 57 56.1
Solyc12g062490.1 Solanum lycopersicum HOM05D001876 ORTHO05D002002 6.7e-07 57.8 58 53.4
Sopen07g034150 Solanum pennellii HOM05D001876 ORTHO05D002002 6.7e-07 57.8 58 53.4
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 6.7e-07 57.8 58 53.4
GSVIVG01021784001 Vitis vinifera HOM05D000162 ORTHO05D000090 6.7e-07 57.8 44 59.1
Migut.H01727 Erythranthe guttata HOM05D001876 ORTHO05D002002 8.7e-07 57.4 58 50.0
Glyma.09G016800 Glycine max HOM05D001876 ORTHO05D002002 8.7e-07 57.4 58 50.0
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 8.7e-07 57.4 58 50.0
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 8.7e-07 57.4 57 54.4
Medtr2g027690 Medicago truncatula HOM05D001876 ORTHO05D002002 8.7e-07 57.4 58 50.0
Nitab4.5_0000611g0240 Nicotiana tabacum HOM05D001876 ORTHO05D002002 8.7e-07 57.4 71 47.9
Psat7g035400 Pisum sativum HOM05D001876 ORTHO05D002002 8.7e-07 57.4 58 50.0
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 8.7e-07 57.4 55 56.4
Solyc10g005920.4 Solanum lycopersicum HOM05D001876 ORTHO05D002002 8.7e-07 57.4 95 38.9
A05p36310 Brassica napus HOM05D001876 ORTHO05D002002 1.1e-06 57.0 58 55.2
BraA05t22432Z Brassica rapa HOM05D001876 ORTHO05D002002 1.1e-06 57.0 58 55.2
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 1.1e-06 57.0 71 46.5
DCAR_013771 Daucus carota HOM05D001876 ORTHO05D002002 1.1e-06 57.0 56 55.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-06 57.0 44 52.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-06 57.0 44 52.3
Gorai.006G081700 Gossypium raimondii HOM05D001876 ORTHO05D002002 1.1e-06 57.0 58 51.7
Sopen07g010040 Solanum pennellii HOM05D001876 ORTHO05D002002 1.1e-06 57.0 58 51.7
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 1.1e-06 57.0 58 50.0
AT3G13300 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 1.5e-06 56.6 58 55.2
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 1.5e-06 56.6 58 48.3
Ciclev10014046m.g Citrus clementina HOM05D001876 ORTHO05D002002 1.5e-06 56.6 58 48.3
Lalb_Chr18g0057511 Lupinus albus HOM05D001876 ORTHO05D002002 1.5e-06 56.6 58 48.3
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 1.5e-06 56.6 58 53.4
Atru.chr1.2235 Acer truncatum HOM05D001876 ORTHO05D002002 1.9e-06 56.2 58 50.0
Aqoxy4G02323 Aquilegia oxysepala HOM05D001876 ORTHO05D002002 1.9e-06 56.2 98 41.8
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 1.9e-06 56.2 58 50.0
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 1.9e-06 56.2 58 50.0
Gohir.D09G067300 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.9e-06 56.2 58 51.7
Peaxi162Scf00158g00320 Petunia axillaris HOM05D024486 ORTHO05D022728 1.9e-06 56.2 42 59.5
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.9e-06 56.2 52 57.7
TPR.G10492 Trifolium pratense HOM05D001876 ORTHO05D002002 1.9e-06 56.2 58 48.3
AL3G25120 Arabidopsis lyrata HOM05D001876 ORTHO05D002002 2.5e-06 55.8 58 53.4
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 2.5e-06 55.8 58 51.7
Oeu026625.1 Olea europaea HOM05D001876 ORTHO05D002002 2.5e-06 55.8 58 53.4
Psat5g293120 Pisum sativum HOM05D001876 ORTHO05D002002 2.5e-06 55.8 53 54.7
Sopen10g001880 Solanum pennellii HOM05D001876 ORTHO05D002002 2.5e-06 55.8 71 45.1
Dinv44640 Davidia involucrata HOM05D010002 ORTHO05D016273 3.3e-06 55.5 91 34.1
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 51.7
Gohir.A09G067600 Gossypium hirsutum HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 51.7
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 48.3
Lj6g0025458 Lotus japonicus HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 46.6
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 53.4
Oeu019693.1 Olea europaea HOM05D001876 ORTHO05D002002 3.3e-06 55.5 58 53.4
RcHm_v2.0_Chr4g0386801 Rosa chinensis HOM05D001876 ORTHO05D002002 3.3e-06 55.5 53 54.7
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 3.3e-06 55.5 53 54.7
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 4.3e-06 55.1 52 55.8
BcaB06g25474 Brassica carinata HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 53.4
BcaC05g29191 Brassica carinata HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 53.4
C05p54620 Brassica napus HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 53.4
BolC5t34127H Brassica oleracea HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 53.4
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 4.3e-06 55.1 71 42.3
Eucgr.E04228 Eucalyptus grandis HOM05D001876 ORTHO05D002002 4.3e-06 55.1 56 50.0
Eucgr.F02007 Eucalyptus grandis HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 51.7
Manes.08G015400 Manihot esculenta HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 51.7
Nitab4.5_0001622g0060 Nicotiana tabacum HOM05D001876 ORTHO05D002002 4.3e-06 55.1 71 46.5
Psat1g171600 Pisum sativum HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 48.3
Psat7g035360 Pisum sativum HOM05D001876 ORTHO05D002002 4.3e-06 55.1 58 48.3
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 4.3e-06 55.1 57 52.6
VMungo0540G0459 Vigna mungo HOM05D001876 ORTHO05D002002 4.3e-06 55.1 62 46.8
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 5.6e-06 54.7 56 53.6
COL.COLO4_31961 Corchorus olitorius HOM05D001876 ORTHO05D002002 5.6e-06 54.7 69 43.5
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 5.6e-06 54.7 58 48.3
Glyma.15G122400 Glycine max HOM05D001876 ORTHO05D002002 5.6e-06 54.7 58 48.3
Lsat_1_v5_gn_9_89380 Lactuca sativa HOM05D001876 ORTHO05D002002 5.6e-06 54.7 58 51.7
EL10Ac4g07507 Beta vulgaris HOM05D001876 ORTHO05D002002 7.4e-06 54.3 92 41.3
BcaC05g29195 Brassica carinata HOM05D001876 ORTHO05D002002 7.4e-06 54.3 71 46.5
C05p54680 Brassica napus HOM05D001876 ORTHO05D002002 7.4e-06 54.3 71 46.5
BolC5t34138H Brassica oleracea HOM05D001876 ORTHO05D002002 7.4e-06 54.3 71 46.5
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 7.4e-06 54.3 56 51.8
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 7.4e-06 54.3 58 50.0
Lalb_Chr15g0088381 Lupinus albus HOM05D001876 ORTHO05D002002 7.4e-06 54.3 54 50.0
Nn1g08429 Nelumbo nucifera HOM05D001876 ORTHO05D002002 7.4e-06 54.3 58 51.7
Thecc.06G243400 Theobroma cacao HOM05D001876 ORTHO05D002002 7.4e-06 54.3 71 42.3
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 9.6e-06 53.9 58 51.7
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 9.6e-06 53.9 58 51.7
Ca_06616_v3 Cicer arietinum L. HOM05D022470 ORTHO05D023753 9.6e-06 53.9 41 61.0
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 9.6e-06 53.9 58 50.0
HanXRQChr13g0409211 Helianthus annuus HOM05D001876 ORTHO05D002002 9.6e-06 53.9 77 42.9
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 9.6e-06 53.9 58 50.0
PGSC0003DMG400003402 Solanum tuberosum HOM05D024486 ORTHO05D022728 9.6e-06 53.9 42 54.8


User provided reference genes

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