Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.1e-165 584.7 309 100.0
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-149 533.5 309 92.9
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.6e-148 529.6 309 91.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-147 526.9 309 91.9
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.1e-145 519.2 329 86.9
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.5e-143 513.1 309 85.4
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.3e-123 446.0 308 73.1
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 5.1e-123 444.9 308 73.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 5.1e-123 444.9 308 72.4
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.1e-122 443.7 308 72.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 3.3e-122 442.2 308 72.1
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.3e-122 441.0 308 72.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-121 440.3 310 72.3
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.1e-121 439.5 308 72.1
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.8e-121 439.1 308 72.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.6e-121 438.7 308 71.8
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 3.6e-121 438.7 308 71.4
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.2e-121 438.0 308 72.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.1e-120 437.2 309 75.7
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.1e-120 437.2 309 71.8
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.4e-120 436.0 308 71.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.4e-120 436.0 310 74.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.0e-120 435.3 310 71.6
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 5.3e-120 434.9 309 70.6
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 5.3e-120 434.9 309 71.8
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.2e-119 433.7 308 73.4
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.0e-119 433.0 309 70.2
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.4e-119 432.2 308 71.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 4.4e-119 431.8 309 76.7
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.4e-119 431.8 308 70.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 4.4e-119 431.8 309 70.2
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 4.4e-119 431.8 309 70.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.8e-119 431.4 309 73.5
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.6e-119 431.0 307 73.6
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 9.9e-119 430.6 308 71.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.3e-118 430.3 310 74.2
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.2e-118 429.5 342 65.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 8.4e-118 427.6 308 74.0
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 8.4e-118 427.6 308 69.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-117 426.8 310 69.7
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.9e-117 426.4 308 69.8
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.4e-117 426.0 308 69.8
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.4e-117 426.0 309 76.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.4e-117 426.0 339 65.5
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.2e-117 425.6 308 69.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 4.2e-117 425.2 310 69.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 9.3e-117 424.1 299 70.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 9.3e-117 424.1 308 68.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.6e-116 421.8 309 68.9
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 4.6e-116 421.8 322 67.7
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 7.9e-116 421.0 308 68.2
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.3e-115 420.2 308 71.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.3e-115 420.2 313 72.5
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.7e-115 419.9 308 69.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.9e-115 418.7 308 69.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 5.1e-115 418.3 310 75.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 6.6e-115 417.9 308 70.1
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 5.6e-114 414.8 308 69.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 7.3e-114 414.5 308 68.2
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 7.3e-114 414.5 309 68.3
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 7.3e-114 414.5 309 71.2
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 9.6e-114 414.1 308 69.2
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.3e-113 413.7 308 68.2
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.6e-113 412.1 308 68.8
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.6e-113 412.1 308 68.2
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 6.2e-113 411.4 310 67.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.1e-112 410.6 308 68.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-112 410.6 337 64.4
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.4e-112 409.5 310 68.4
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 4.0e-112 408.7 310 68.7
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.9e-112 407.9 308 67.9
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 9.0e-112 407.5 308 72.4
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 9.0e-112 407.5 308 72.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.5e-111 406.8 289 72.0
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.4e-111 405.6 312 65.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 7.6e-111 404.4 314 65.3
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 9.9e-111 404.1 308 66.2
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.3e-110 403.7 308 65.3
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.2e-110 402.9 309 69.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 3.8e-110 402.1 308 69.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.4e-109 400.2 315 68.3
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.9e-109 399.8 310 69.7
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.4e-109 398.3 308 66.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 5.4e-109 398.3 308 67.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 7.1e-109 397.9 309 67.3
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.1e-108 396.4 308 65.9
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.0e-107 394.0 308 65.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.0e-107 392.5 308 68.8
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.9e-106 389.8 285 68.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.3e-106 389.0 301 68.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.4e-106 387.9 309 65.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.8e-104 383.3 309 68.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.0e-104 382.1 308 67.9
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-104 381.3 308 64.0
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-104 381.3 308 64.0
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 9.0e-104 380.9 338 60.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.2e-103 380.6 308 63.0
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.0e-103 379.8 308 69.2
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 3.4e-103 379.0 404 54.0
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 7.6e-103 377.9 308 68.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.0e-102 377.5 309 67.3
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-102 377.1 308 63.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 3.8e-102 375.6 308 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 8.4e-102 374.4 308 64.9
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.9e-101 373.2 309 67.3
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.5e-101 372.9 308 65.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.3e-101 370.9 308 63.3
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.2e-100 370.5 308 67.2
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.3e-99 367.1 312 61.5
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.8e-99 366.7 239 76.6
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.0e-99 365.9 308 63.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 5.7e-98 361.7 308 60.7
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.5e-95 353.6 316 62.7
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.1e-92 343.2 309 57.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-91 340.1 240 70.4
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 7.4e-90 334.7 278 68.3
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.6e-87 326.2 308 56.8
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 7.7e-87 324.7 257 66.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.0e-86 324.3 239 66.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.1e-85 320.9 308 58.1
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 7.2e-85 318.2 311 55.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 7.2e-85 318.2 236 67.4
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.2e-84 317.4 315 54.9
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.5e-82 310.5 207 74.4
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 8.2e-81 304.7 226 69.0
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.2e-79 300.8 304 53.0
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.2e-76 290.8 303 54.5
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.7e-70 270.4 317 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.5e-69 267.3 206 63.6
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.5e-69 266.5 314 47.5
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.4e-67 260.8 226 60.6
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 7.5e-66 255.0 205 62.4
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.8e-62 242.7 312 46.8
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.2e-57 226.9 309 45.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 3.0e-51 206.5 311 43.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 3.0e-51 206.5 311 43.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 3.0e-51 206.5 311 43.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.8e-46 189.5 285 45.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 8.3e-41 171.8 106 78.3
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.2e-40 169.9 103 80.6
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 4.6e-39 166.0 153 56.9
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.2e-35 152.5 175 50.3
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.5e-34 151.0 175 49.7
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.5e-34 151.0 175 49.7
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 8.3e-33 145.2 246 39.0
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-32 144.4 85 82.4
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.8e-26 122.5 107 55.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 5.8e-26 122.5 212 34.4
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.9e-25 120.2 73 78.1
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.9e-25 120.2 73 78.1
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.1e-24 118.2 72 77.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-24 118.2 76 69.7
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.7e-23 113.6 95 67.4
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.5e-21 107.1 79 67.1
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 5.8e-18 95.9 206 36.9
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.2e-17 94.0 146 39.7
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 7.1e-16 89.0 78 57.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 3.6e-12 76.6 57 63.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 4.4e-10 69.7 104 42.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.2e-08 63.5 157 31.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.4e-08 62.8 56 58.9
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 5.1e-06 56.2 44 54.5
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 8.7e-06 55.5 44 54.5


User provided reference genes

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