Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 2280.4 1169 100.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 0.0e+00 1884.4 1061 93.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1874.8 1063 92.9
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 0.0e+00 1856.6 1062 91.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 0.0e+00 1546.6 1062 78.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 0.0e+00 1097.4 1077 58.6
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.5e-296 1021.1 1077 55.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.4e-250 868.6 1077 50.1
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 5.6e-215 752.3 1114 43.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.2e-210 736.5 1160 42.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.5e-209 733.0 1144 41.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.2e-187 660.6 1119 40.7
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 6.5e-187 659.1 1138 39.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-184 651.4 1128 39.3
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.3e-184 650.6 1094 41.4
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 8.2e-182 642.1 1150 39.5
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.2e-180 638.3 1143 39.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 9.4e-178 628.6 1152 38.2
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-175 621.3 1116 38.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.4e-173 614.0 1181 37.1
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-168 597.8 1131 38.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 3.9e-168 596.7 1122 38.2
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.3e-167 593.6 1213 35.3
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 2.0e-164 584.3 1112 37.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 3.8e-163 580.1 1143 36.2
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 6.1e-161 572.8 1119 37.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.0e-159 567.8 1117 37.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.4e-157 561.6 1115 37.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 3.5e-156 557.0 1147 36.4
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.4e-151 540.4 1117 34.9
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 3.1e-149 533.9 1118 34.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 3.3e-146 523.9 1157 34.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.6e-145 520.4 1129 34.5
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.0e-139 500.0 1076 36.2
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.6e-139 499.6 1083 35.3
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.5e-138 498.4 1101 35.6
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 5.6e-138 496.5 1119 34.4
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.0e-136 490.3 1102 33.8
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 5.0e-131 473.4 1123 34.1
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.1e-128 464.2 1111 33.9
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 8.9e-128 462.6 1071 33.7
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.4e-119 433.7 1103 33.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.3e-118 432.2 1129 32.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.3e-118 432.2 1225 31.5
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.4e-117 427.9 1123 31.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.4e-117 427.9 1083 31.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 4.6e-116 423.7 1105 32.2
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.3e-115 422.2 890 36.1
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.3e-115 421.4 1117 32.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.5e-114 417.9 1096 32.8
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.6e-114 416.8 1205 30.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 9.6e-114 416.0 1115 31.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.2e-113 415.6 1104 33.3
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 8.1e-113 412.9 1095 32.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 8.1e-113 412.9 1102 31.7
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.1e-112 412.5 1084 32.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.0e-112 410.6 1070 32.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 4.0e-112 410.6 1085 32.8
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.4e-111 407.5 1122 31.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.4e-110 403.3 1100 31.4
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.2e-109 401.0 1093 30.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.3e-107 395.6 1099 31.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.6e-103 379.8 1211 29.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-102 379.0 1069 30.3
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 8.4e-102 376.3 1170 30.3
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.7e-100 371.3 867 34.7
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.6e-100 370.5 1162 30.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 7.9e-100 369.8 1125 30.1
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 4.3e-98 364.0 1205 29.8
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.1e-97 361.7 1109 30.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 4.5e-95 354.0 602 40.9
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 4.9e-94 350.5 1089 30.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-90 339.0 1085 29.1
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.9e-90 338.6 1126 29.9
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 9.6e-90 336.3 1070 30.0
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 5.3e-88 330.5 694 36.9
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-87 328.9 1100 29.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.9e-85 322.0 905 31.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-83 314.7 1074 28.3
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.5e-82 311.6 903 30.5
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.3e-82 311.2 1046 29.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 5.7e-82 310.5 785 32.6
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 4.8e-81 307.4 421 45.1
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 7.6e-79 300.1 761 32.5
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.3e-78 299.3 729 33.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 9.7e-74 283.1 746 32.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 6.3e-73 280.4 746 32.0
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.1e-72 278.1 887 29.1
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.3e-72 277.3 867 30.0
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.5e-71 275.8 868 30.5
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 4.5e-71 274.2 851 30.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.4e-67 262.7 800 31.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-67 262.3 872 29.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 8.5e-62 243.4 155 78.1
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.7e-60 238.4 950 26.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.7e-57 229.2 742 29.0
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.2e-52 213.0 764 30.9
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.6e-52 212.6 786 28.1
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.4e-51 209.5 1149 24.3
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 4.0e-51 208.0 544 33.5
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.5e-47 194.9 385 36.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.5e-47 194.9 791 28.2
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.8e-46 191.4 343 37.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-45 189.5 512 30.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 3.2e-45 188.3 755 28.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 9.4e-45 186.8 642 29.9
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 4.7e-44 184.5 805 27.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.5e-42 179.5 359 34.3
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.0e-42 179.1 265 45.3
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.2e-38 165.6 782 25.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-38 163.7 504 29.6
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.6e-36 158.3 701 26.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.2e-35 154.5 314 36.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.2e-34 153.3 313 31.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-31 143.3 1029 23.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 6.1e-28 131.0 1058 23.4
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 3.0e-27 128.6 228 37.7
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 5.2e-27 127.9 540 26.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-25 122.9 185 42.7
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 2.9e-25 122.1 611 25.5
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.7e-25 121.7 181 40.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.4e-24 119.8 182 39.6
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.8e-24 119.4 115 54.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.4e-24 119.0 149 43.6
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.6e-23 116.3 206 37.4
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.6e-23 116.3 152 41.4
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.6e-23 116.3 200 37.0
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 5.9e-23 114.4 172 40.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 7.8e-23 114.0 361 25.5
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 9.5e-21 107.1 346 27.7
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 9.8e-18 97.1 144 38.9
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.3e-17 96.7 321 27.1
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 4.9e-17 94.7 458 28.2
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.1e-16 93.6 716 22.3
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 5.4e-16 91.3 778 22.4
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.2e-15 90.1 342 26.6
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 6.0e-15 87.8 774 21.7
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.3e-14 85.9 383 25.8
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.5e-13 82.4 445 24.9
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.8e-12 79.0 78 50.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.6e-10 72.4 66 54.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 3.4e-10 72.0 300 25.0
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.9e-09 68.9 162 37.7
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.6e-07 63.2 466 23.2


User provided reference genes

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