Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-236 820.5 416 100.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-194 682.9 349 98.9
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-194 682.9 349 98.9
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-166 589.7 309 96.1
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.7e-159 565.8 355 83.7
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 8.6e-150 534.3 371 74.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 1.2e-148 530.4 375 71.5
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.6e-148 528.9 375 72.3
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 1.8e-147 526.6 373 72.7
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.0e-147 525.8 375 72.0
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 4.0e-147 525.4 373 71.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-146 523.9 375 71.7
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 3.4e-146 522.3 375 71.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-146 522.3 375 71.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 3.4e-146 522.3 373 71.3
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 5.7e-146 521.5 373 72.1
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 5.7e-146 521.5 382 70.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 1.3e-145 520.4 373 71.6
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 1.7e-145 520.0 373 71.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 2.9e-145 519.2 373 71.3
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.9e-145 519.2 373 71.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 6.4e-145 518.1 373 71.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 6.4e-145 518.1 373 71.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 8.3e-145 517.7 373 71.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 8.3e-145 517.7 382 69.9
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 8.3e-145 517.7 373 71.6
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 8.3e-145 517.7 373 70.8
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 1.1e-144 517.3 373 71.6
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.4e-144 516.9 373 71.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.4e-144 516.9 373 71.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 2.4e-144 516.2 373 70.5
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.2e-144 515.8 373 70.8
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 3.2e-144 515.8 373 70.0
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.2e-144 515.8 272 96.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.2e-144 515.8 373 71.3
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 4.1e-144 515.4 374 69.5
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 4.1e-144 515.4 373 70.0
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 5.4e-144 515.0 373 69.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 7.0e-144 514.6 382 68.1
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 7.0e-144 514.6 373 71.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 7.0e-144 514.6 373 71.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 1.2e-143 513.8 373 69.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 1.2e-143 513.8 373 69.2
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 1.2e-143 513.8 373 70.8
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 1.2e-143 513.8 373 68.9
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 2.0e-143 513.1 373 69.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 2.0e-143 513.1 373 68.9
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 2.7e-143 512.7 374 70.9
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 2.7e-143 512.7 373 70.2
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.5e-143 512.3 374 69.8
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 3.5e-143 512.3 373 69.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 3.5e-143 512.3 374 70.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 4.6e-143 511.9 373 70.8
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 4.6e-143 511.9 373 70.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 5.9e-143 511.5 373 70.5
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 7.8e-143 511.1 370 70.5
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 1.0e-142 510.8 373 68.4
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 1.0e-142 510.8 373 68.4
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 1.0e-142 510.8 373 70.0
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 1.0e-142 510.8 373 70.5
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 1.3e-142 510.4 373 68.4
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 1.3e-142 510.4 373 68.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 1.3e-142 510.4 373 68.4
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 1.3e-142 510.4 382 69.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 1.3e-142 510.4 373 70.0
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 1.7e-142 510.0 373 70.0
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 1.7e-142 510.0 373 70.0
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 2.3e-142 509.6 373 69.7
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 2.3e-142 509.6 373 69.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 2.3e-142 509.6 376 70.2
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 2.3e-142 509.6 373 69.4
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 3.0e-142 509.2 379 69.4
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 3.0e-142 509.2 374 68.7
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 3.9e-142 508.8 373 69.4
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 5.0e-142 508.4 373 70.5
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 5.0e-142 508.4 373 69.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.5e-141 506.9 373 68.6
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 1.5e-141 506.9 373 70.5
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.9e-141 506.5 376 69.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.9e-141 506.5 373 68.9
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 2.5e-141 506.1 379 69.1
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 2.5e-141 506.1 373 68.9
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 4.3e-141 505.4 373 69.7
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 7.3e-141 504.6 374 69.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 7.3e-141 504.6 373 69.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 9.5e-141 504.2 373 69.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 9.5e-141 504.2 373 69.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 9.5e-141 504.2 373 68.6
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 9.5e-141 504.2 373 68.9
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 1.6e-140 503.4 373 70.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 1.6e-140 503.4 373 67.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.1e-140 503.1 373 69.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.1e-140 503.1 373 70.0
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 3.6e-140 502.3 382 68.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 4.7e-140 501.9 373 70.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 1.4e-139 500.4 407 65.6
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.8e-139 500.0 373 69.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 4.0e-139 498.8 373 67.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.0e-138 496.5 373 68.9
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 2.6e-138 496.1 373 68.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 3.7e-137 492.3 374 67.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 4.9e-137 491.9 375 66.9
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.1e-136 490.7 373 66.8
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 2.4e-136 489.6 374 67.6
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 4.1e-136 488.8 374 67.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.0e-135 486.5 383 65.0
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 6.0e-135 485.0 421 61.5
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-134 482.6 374 66.6
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 6.6e-134 481.5 382 66.8
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 1.2e-132 477.2 373 65.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 4.7e-132 475.3 370 64.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-131 473.4 370 64.9
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 3.4e-130 469.2 373 61.7
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 1.3e-129 467.2 373 66.2
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.7e-129 466.8 374 63.9
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.9e-129 466.1 374 63.4
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 6.4e-129 464.9 373 63.3
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 1.4e-128 463.8 385 63.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 3.6e-124 449.1 372 61.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.8e-123 446.8 372 60.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.2e-123 445.3 369 66.9
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.5e-122 443.7 373 63.3
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 2.0e-122 443.4 372 59.9
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 5.4e-120 435.3 350 62.3
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 3.9e-118 429.1 386 56.7
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.9e-117 426.8 286 74.5
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 9.9e-114 414.5 371 56.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.9e-110 402.5 387 53.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.3e-108 397.5 375 57.9
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-103 378.6 195 98.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.0e-102 377.9 255 75.7
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 9.0e-99 364.8 388 51.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.3e-97 360.9 378 52.1
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 4.9e-97 359.0 349 52.4
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-94 350.1 394 49.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.6e-93 345.5 374 50.0
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 9.0e-91 338.2 376 50.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.6e-84 317.4 373 51.5
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-83 314.3 207 82.6
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.6e-76 290.8 192 75.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.7e-68 263.1 366 41.8
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.2e-66 258.1 189 69.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-64 250.8 321 45.2
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.5e-64 250.4 396 39.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.2e-64 248.8 132 94.7
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.0e-49 201.8 171 59.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.0e-49 199.5 131 74.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 6.5e-49 199.1 331 37.2
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 3.1e-43 180.3 409 32.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 3.7e-36 156.8 87 90.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 8.3e-36 155.6 161 55.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.0e-30 137.1 180 42.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 8.3e-20 102.4 101 53.5
FAN18G1191 Fragaria x ananassa HOM05D013531 ORTHO05D205733 2.3e-14 84.3 45 93.3
FAN09G4726 Fragaria x ananassa HOM05D013531 ORTHO05D205572 1.2e-13 82.0 42 95.2
FAN15G0944 Fragaria x ananassa HOM05D013531 ORTHO05D015015 5.4e-11 73.2 36 97.2
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 8.1e-07 59.3 68 47.1


User provided reference genes

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