Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
FAN17G0462 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 5.2e-24 113.6 60 100.0
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 1.5e-23 112.1 60 96.7
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 1.5e-23 112.1 60 96.7
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 9.8e-23 109.4 59 91.5
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 1.3e-22 109.0 60 95.0
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.7e-22 108.6 60 90.0
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 2.2e-22 108.2 60 91.7
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 2.2e-22 108.2 60 91.7
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 2.2e-22 108.2 60 91.7
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 2.9e-22 107.8 60 90.0
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 3.7e-22 107.5 60 88.3
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 3.7e-22 107.5 60 88.3
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 88.3
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 88.3
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 88.3
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 86.7
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 4.9e-22 107.1 60 90.0
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 90.0
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 86.7
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 85.0
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 86.7
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 6.4e-22 106.7 60 88.3
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 8.3e-22 106.3 60 86.7
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 88.3
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 88.3
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 86.7
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 88.3
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 86.7
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 86.7
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.1e-21 105.9 60 90.0
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 86.7
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.4e-21 105.5 60 88.3
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 1.9e-21 105.1 60 88.3
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 1.9e-21 105.1 60 88.3
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 1.9e-21 105.1 60 88.3
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 1.9e-21 105.1 60 88.3
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.9e-21 105.1 60 86.7
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 88.3
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 88.3
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 86.7
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 86.7
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 85.0
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 2.4e-21 104.8 60 85.0
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 3.2e-21 104.4 60 86.7
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 3.2e-21 104.4 60 86.7
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 3.2e-21 104.4 60 86.7
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 3.2e-21 104.4 60 85.0
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 3.2e-21 104.4 60 86.7
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 4.1e-21 104.0 60 85.0
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 4.1e-21 104.0 60 86.7
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 5.4e-21 103.6 60 86.7
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 5.4e-21 103.6 60 86.7
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 5.4e-21 103.6 60 83.3
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 7.0e-21 103.2 60 85.0
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 7.0e-21 103.2 60 85.0
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 7.0e-21 103.2 60 85.0
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 7.0e-21 103.2 60 85.0
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 9.2e-21 102.8 60 85.0
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 9.2e-21 102.8 60 85.0
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 83.3
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 83.3
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.2e-20 102.4 60 86.7
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.6e-20 102.1 60 85.0
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 1.6e-20 102.1 60 85.0
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 1.6e-20 102.1 60 85.0
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 2.0e-20 101.7 60 83.3
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 2.7e-20 101.3 60 85.0
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 3.5e-20 100.9 60 81.7
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 3.5e-20 100.9 60 85.0
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 4.6e-20 100.5 60 83.3
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 6.0e-20 100.1 60 83.3
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 6.0e-20 100.1 59 83.1
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 6.0e-20 100.1 60 81.7
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 7.8e-20 99.8 60 83.3
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 1.0e-19 99.4 60 81.7
RcHm_v2.0_Chr4g0439321 Rosa chinensis HOM05D003245 ORTHO05D004125 1.0e-19 99.4 55 92.7
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 1.7e-19 98.6 60 80.0
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 2.3e-19 98.2 60 81.7
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 2.3e-19 98.2 60 81.7
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.9e-19 97.4 60 78.3
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 3.9e-19 97.4 60 78.3
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 5.0e-19 97.1 60 80.0
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 1.1e-18 95.9 60 78.3
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 1.5e-18 95.5 60 75.0
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 1.5e-18 95.5 60 78.3
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 1.9e-18 95.1 60 78.3
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.9e-18 95.1 60 80.0
Gohir.A02G090301 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.3e-18 94.4 60 78.3
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 7.3e-18 93.2 60 76.7
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 9.5e-18 92.8 60 75.0
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 2.8e-17 91.3 55 81.8
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 4.7e-17 90.5 60 81.7
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 3.1e-16 87.8 50 84.0
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.2e-15 85.9 60 66.7
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.5e-15 85.5 47 87.2
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 1.5e-15 85.5 47 87.2
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.5e-15 85.5 47 83.0
BraA03t15022Z Brassica rapa HOM05D003245 ORTHO05D004125 2.0e-15 85.1 60 75.0
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 2.0e-15 85.1 48 83.3
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 1.3e-14 82.4 46 84.8
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.3e-14 82.4 58 72.4
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 1.7e-14 82.0 49 79.6
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 2.9e-14 81.3 57 68.4
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 3.7e-14 80.9 47 83.0
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 7.1e-13 76.6 60 60.0
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.2e-12 75.9 51 70.6
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.2e-12 75.9 45 77.8
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 2.7e-12 74.7 50 70.0
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 2.7e-12 74.7 43 79.1
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 2.3e-11 71.6 47 70.2
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 2.3e-11 71.6 57 59.6
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 5.1e-11 70.5 59 57.6
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.5e-10 68.9 56 57.1
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.5e-10 68.9 56 57.1
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 7.3e-10 66.6 51 56.9
RcHm_v2.0_Chr5g0028471 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-06 55.8 53 66.0


User provided reference genes

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