Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.1e-273 943.3 480 100.0
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-267 926.0 480 98.3
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.4e-267 924.1 480 97.9
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.2e-266 921.8 480 97.5
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 7.4e-238 827.0 482 90.2
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 6.5e-210 734.2 482 79.7
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.2e-209 731.9 481 79.4
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.5e-193 679.1 482 73.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 8.0e-192 674.1 492 71.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 4.0e-191 671.8 495 71.1
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.1e-188 662.1 489 70.3
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 7.0e-188 661.0 497 71.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.8e-186 655.2 485 72.4
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 6.6e-186 654.4 489 69.7
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.0e-183 647.1 488 70.3
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 4.0e-183 645.2 488 71.9
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.4e-182 641.7 486 70.6
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.5e-179 632.1 478 70.9
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.0e-178 628.2 487 69.2
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.1e-177 627.1 490 69.4
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.9e-177 626.3 477 70.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 2.5e-177 625.9 481 70.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.3e-177 625.5 477 68.8
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.6e-176 623.2 491 68.4
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.8e-176 622.5 483 70.2
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 6.1e-176 621.3 491 68.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.0e-175 620.5 478 68.0
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 4.0e-175 618.6 485 68.7
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.2e-174 617.1 498 67.9
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.5e-174 616.7 478 69.2
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 6.4e-173 611.3 496 66.5
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.4e-172 609.4 471 69.9
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 5.4e-172 608.2 467 68.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 9.2e-172 607.4 477 67.9
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.2e-171 607.1 528 62.9
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.7e-171 605.9 479 68.5
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 5.0e-170 601.7 471 68.2
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 8.0e-168 594.3 481 65.7
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.4e-167 593.6 451 69.8
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 4.0e-167 592.0 493 65.7
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.2e-167 591.7 481 65.5
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 8.9e-167 590.9 490 66.1
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.6e-166 589.3 472 66.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.4e-166 588.6 482 66.6
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 9.8e-166 587.4 450 69.3
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.3e-165 587.0 493 65.3
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.7e-165 586.6 488 65.0
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.9e-165 585.9 501 65.7
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.9e-164 583.2 463 66.7
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.9e-164 583.2 518 62.9
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.4e-164 582.8 493 64.9
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 4.1e-164 582.0 447 68.2
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 5.4e-164 581.6 452 68.4
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.6e-163 580.1 447 68.5
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.6e-163 580.1 475 64.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.7e-162 576.6 499 64.1
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 5.1e-162 575.1 435 70.1
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-161 573.9 496 62.9
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.5e-161 573.5 470 65.1
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.5e-161 572.8 487 64.1
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 9.5e-161 570.9 481 64.4
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.6e-160 570.1 449 67.5
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 8.1e-160 567.8 483 61.9
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.3e-159 566.2 494 63.4
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.2e-159 565.1 498 61.8
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 6.8e-159 564.7 421 69.6
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.0e-158 563.1 469 65.2
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 4.4e-158 562.0 435 67.6
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 5.8e-158 561.6 496 62.1
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 9.9e-158 560.8 483 63.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.7e-157 560.1 452 65.9
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.2e-157 559.7 498 61.6
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.4e-157 558.1 479 63.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.6e-155 553.5 491 61.9
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 4.6e-155 552.0 474 63.3
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.3e-154 550.4 381 74.8
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.7e-154 550.1 423 67.1
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 6.6e-154 548.1 406 70.9
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 8.6e-154 547.7 447 65.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.5e-153 547.0 493 61.7
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 7.3e-153 544.7 385 73.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.2e-150 537.3 400 68.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 6.0e-147 525.0 512 57.0
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.5e-145 519.6 494 59.7
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 8.1e-144 514.6 422 64.2
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 9.0e-143 511.1 355 71.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 3.4e-142 509.2 496 58.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.4e-140 503.8 491 58.5
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.7e-139 499.6 253 97.6
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.9e-138 495.7 530 55.3
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 4.3e-137 492.3 483 59.4
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.8e-134 481.9 383 66.6
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 8.4e-133 478.0 354 72.0
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.9e-130 469.2 391 61.6
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.1e-129 467.6 474 56.5
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.3e-129 465.7 373 67.0
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.8e-128 462.2 414 58.9
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.9e-125 453.0 461 54.4
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 7.9e-123 444.9 351 63.5
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 5.7e-121 438.7 495 51.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 3.2e-116 422.9 363 60.6
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.2e-110 404.4 293 70.0
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.2e-110 404.4 380 56.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 6.7e-106 388.7 341 59.5
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 9.7e-105 384.8 450 49.6
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 2.2e-104 383.6 432 49.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.2e-104 381.7 394 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.8e-103 380.6 439 50.3
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 4.1e-95 352.8 269 68.4
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.3e-93 347.8 379 49.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.0e-93 345.9 274 67.2
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.2e-92 343.2 473 45.9
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 7.7e-78 295.4 343 49.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.7e-75 287.0 354 47.7
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.9e-70 269.2 311 50.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.0e-69 268.5 246 59.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 9.2e-63 245.4 479 36.3
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.1e-59 234.2 283 49.5
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 8.6e-53 212.2 490 31.0
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 6.0e-38 162.9 117 74.4
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.1e-35 154.5 124 65.3
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.6e-30 136.7 134 61.9
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.1e-28 132.1 172 47.7
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.1e-27 125.9 184 42.9
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.5e-20 105.1 126 53.2
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 2.5e-20 104.4 104 52.9
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 9.6e-20 102.4 225 36.0
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.5e-17 93.6 89 53.9
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.6e-17 92.8 117 47.0
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.4e-15 87.8 161 42.2
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 7.4e-12 76.3 268 28.7
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 6.9e-10 69.7 162 37.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.0e-09 68.2 67 53.7
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.6e-09 67.8 69 50.7
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.6e-09 66.2 47 74.5


User provided reference genes

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