Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-164 583.2 288 100.0
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.1e-159 565.1 297 94.9
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 6.8e-154 547.4 333 85.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.3e-152 540.4 341 82.4
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.3e-136 490.0 337 76.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.6e-126 454.9 300 79.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 6.0e-118 427.9 335 65.7
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 7.4e-100 367.9 323 60.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.6e-97 359.4 329 56.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.2e-96 356.3 332 56.9
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 3.8e-96 355.5 322 57.5
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 8.4e-96 354.4 301 58.8
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.1e-95 354.0 324 55.9
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.4e-95 353.6 330 56.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.9e-95 353.2 295 59.3
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 3.2e-95 352.4 301 58.8
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.2e-95 352.4 325 55.7
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.1e-95 351.3 330 56.1
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 7.1e-95 351.3 301 58.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-94 350.5 296 58.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.6e-94 350.1 330 57.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.3e-93 347.1 321 57.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.8e-93 346.7 294 59.2
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 3.9e-93 345.5 312 55.8
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 6.7e-93 344.7 351 53.8
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 4.3e-92 342.0 248 69.0
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.4e-92 341.3 284 58.8
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 9.6e-92 340.9 288 58.7
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 9.6e-92 340.9 310 55.5
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.6e-91 340.1 249 66.7
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.6e-91 340.1 321 57.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.1e-91 339.7 285 58.2
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.7e-91 339.0 320 54.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 6.2e-91 338.2 332 54.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.4e-90 336.3 326 53.1
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.0e-89 333.2 316 54.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 4.5e-89 332.0 285 58.6
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.3e-88 330.5 288 56.2
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.9e-88 328.6 289 57.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 4.9e-88 328.6 280 58.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 8.4e-88 327.8 300 54.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 1.4e-87 327.0 285 56.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.9e-87 326.6 288 56.2
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 4.2e-87 325.5 285 57.9
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.1e-86 323.2 323 52.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.3e-85 320.5 287 55.7
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.8e-85 320.1 288 52.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.3e-85 319.7 303 53.8
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.1e-85 318.5 308 52.9
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 5.1e-85 318.5 331 51.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 7.4e-84 314.7 280 56.8
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 9.6e-84 314.3 290 54.8
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.8e-83 312.8 282 56.0
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 3.7e-83 312.4 325 49.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.4e-82 309.7 303 51.2
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-82 309.3 323 49.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.6e-81 306.2 301 51.5
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-81 305.1 324 50.6
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 5.9e-81 305.1 289 52.6
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.3e-80 303.9 301 50.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 2.2e-80 303.1 292 54.1
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.9e-80 302.8 331 52.0
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-79 300.4 298 50.3
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.9e-79 300.1 289 51.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 3.2e-79 299.3 301 50.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.5e-79 298.5 259 57.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-78 297.0 318 48.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-78 297.0 318 48.7
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-78 297.0 324 50.6
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 3.6e-78 295.8 298 49.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 4.6e-78 295.4 293 50.9
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.6e-78 295.4 298 49.7
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 7.9e-78 294.7 318 48.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 7.9e-78 294.7 297 49.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-77 293.5 291 50.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 3.0e-77 292.7 286 51.0
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.5e-76 289.7 301 48.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 4.3e-76 288.9 306 48.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.2e-75 286.6 256 56.6
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.8e-75 286.2 253 57.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.1e-74 284.3 249 57.4
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.8e-74 283.5 259 55.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 6.9e-74 281.6 252 55.6
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.2e-73 280.8 255 55.3
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 4.5e-73 278.9 253 57.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 2.5e-71 273.1 234 60.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.6e-70 268.9 294 51.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 4.6e-70 268.9 355 44.8
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.4e-69 267.3 221 58.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 3.3e-68 262.7 295 47.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 9.7e-68 261.2 299 47.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.3e-67 260.8 285 47.7
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.7e-67 259.2 299 45.5
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.8e-64 249.2 225 57.8
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 4.7e-62 242.3 291 44.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.3e-59 234.2 256 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.0e-57 226.9 279 40.5
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.0e-56 222.2 285 42.8
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.3e-53 213.4 565 29.4
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.0e-53 212.6 278 38.5
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 5.2e-53 212.2 321 37.7
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.4e-50 204.1 280 38.9
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.5e-49 199.1 190 52.1
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.7e-48 197.2 196 51.5
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.0e-48 195.7 211 52.1
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.5e-47 194.1 191 49.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.1e-46 188.7 205 51.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.0e-45 186.4 165 57.6
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.8e-43 179.1 111 73.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.4e-42 177.6 268 37.7
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.4e-42 177.6 115 70.4
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.8e-42 177.2 111 68.5
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 5.9e-41 172.2 117 65.0
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 8.0e-38 161.8 123 61.8
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-36 157.9 142 59.2
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.5e-36 155.2 169 49.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.8e-35 153.3 190 45.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.1e-34 151.4 104 68.3
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.2e-34 148.3 144 52.1
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 6.1e-30 135.6 127 53.5
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.2e-29 132.5 77 74.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 9.5e-23 111.7 215 28.4
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 9.5e-23 111.7 171 39.8
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 8.0e-22 108.6 121 47.9
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.2e-20 104.8 76 60.5
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-18 97.8 67 70.1
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.0e-17 92.4 103 52.4
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 3.0e-16 90.1 90 53.3
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.5e-15 85.1 124 37.9
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 2.3e-13 80.5 69 56.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.2e-13 79.3 85 49.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 3.7e-11 73.2 53 66.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-10 71.6 49 67.3
MD03G1168900 Malus domestica HOM05D005815 ORTHO05D007023 8.6e-08 62.0 77 49.4
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.7e-06 56.2 52 50.0
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 6.2e-06 55.8 41 65.9


User provided reference genes

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