Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-248 860.5 446 100.0
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.6e-202 708.4 449 84.0
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 2.8e-183 645.6 467 73.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.5e-181 638.3 329 97.0
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.5e-181 638.3 329 97.0
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 7.7e-181 637.5 481 69.9
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 3.8e-180 635.2 486 69.1
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 6.5e-180 634.4 481 69.0
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 6.5e-180 634.4 481 70.1
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 2.5e-179 632.5 481 69.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.5e-179 632.5 481 70.1
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 3.2e-179 632.1 481 69.4
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.2e-179 631.7 486 69.3
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 4.2e-179 631.7 465 70.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 5.5e-179 631.3 481 69.0
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 9.4e-179 630.6 481 68.6
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 9.4e-179 630.6 481 69.2
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 1.2e-178 630.2 481 68.6
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.2e-178 630.2 481 68.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.6e-178 629.8 481 68.6
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 1.6e-178 629.8 486 69.1
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 1.6e-178 629.8 481 68.4
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 2.1e-178 629.4 481 68.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.6e-178 628.6 486 68.9
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 3.6e-178 628.6 481 69.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 4.7e-178 628.2 492 66.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 4.7e-178 628.2 482 68.3
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 6.1e-178 627.9 464 70.0
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 8.0e-178 627.5 481 69.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 1.0e-177 627.1 481 68.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.4e-177 626.7 481 68.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 1.8e-177 626.3 480 69.0
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 2.3e-177 625.9 481 67.8
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 3.0e-177 625.5 481 68.4
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.0e-177 625.5 481 68.8
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 3.0e-177 625.5 481 67.6
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 8.8e-177 624.0 481 67.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 1.2e-176 623.6 481 69.0
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 1.5e-176 623.2 481 67.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 1.5e-176 623.2 481 68.4
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 1.5e-176 623.2 481 67.6
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 2.0e-176 622.9 481 67.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 2.0e-176 622.9 465 69.7
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 2.6e-176 622.5 481 68.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 3.3e-176 622.1 481 67.8
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 4.4e-176 621.7 481 68.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 4.4e-176 621.7 481 68.0
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 5.7e-176 621.3 484 68.0
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 5.7e-176 621.3 481 68.0
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 9.7e-176 620.5 481 68.0
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 1.7e-175 619.8 482 68.0
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.7e-175 619.8 482 66.6
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 1.7e-175 619.8 481 67.6
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.8e-175 619.0 481 67.8
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 3.7e-175 618.6 481 67.4
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 4.8e-175 618.2 484 67.8
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 6.3e-175 617.8 482 66.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-174 616.3 527 63.9
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 2.4e-174 615.9 481 66.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 2.4e-174 615.9 481 67.4
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 3.1e-174 615.5 481 67.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 4.1e-174 615.1 465 68.6
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 5.3e-174 614.8 481 67.2
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.3e-174 614.8 526 64.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 5.3e-174 614.8 481 67.8
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 9.1e-174 614.0 481 65.9
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 1.2e-173 613.6 481 65.9
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 1.2e-173 613.6 480 66.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 1.6e-173 613.2 481 65.7
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 1.6e-173 613.2 481 65.7
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 2.7e-173 612.5 481 65.3
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 2.7e-173 612.5 481 65.3
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 2.7e-173 612.5 481 65.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 2.7e-173 612.5 481 65.3
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 2.7e-173 612.5 481 65.3
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 4.5e-173 611.7 481 65.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 4.5e-173 611.7 481 65.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 5.9e-173 611.3 465 67.3
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 5.9e-173 611.3 481 65.5
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 5.9e-173 611.3 480 67.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 1.3e-172 610.1 481 66.3
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.9e-172 609.0 481 66.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 5.0e-172 608.2 515 65.2
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 5.0e-172 608.2 481 65.9
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 6.5e-172 607.8 481 66.9
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.5e-171 606.7 483 66.0
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 5.5e-171 604.7 481 66.5
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 7.2e-171 604.4 481 65.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 1.2e-170 603.6 481 65.3
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 2.7e-170 602.4 461 67.7
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 2.7e-170 602.4 479 66.8
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 2.7e-170 602.4 483 66.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 3.6e-170 602.1 481 65.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 6.1e-170 601.3 472 67.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 1.4e-169 600.1 482 65.8
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.3e-169 599.4 481 66.3
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 6.8e-169 597.8 479 66.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 5.7e-168 594.7 482 65.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 7.5e-168 594.3 498 63.5
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 1.3e-167 593.6 481 64.4
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 1.7e-167 593.2 482 65.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-167 593.2 482 65.4
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.7e-167 592.0 480 64.6
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 3.7e-167 592.0 459 67.8
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.3e-167 591.3 309 96.1
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 4.5e-165 585.1 519 62.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.0e-164 583.9 481 63.2
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-164 582.8 480 64.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-164 581.6 480 63.8
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 6.6e-164 581.3 449 67.9
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.2e-163 578.6 464 64.9
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 8.0e-162 574.3 480 63.5
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.8e-161 571.2 481 62.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 6.8e-161 571.2 475 65.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 1.4e-158 563.5 480 60.2
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 5.4e-158 561.6 480 60.8
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 3.8e-156 555.4 481 62.4
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.9e-155 553.1 481 59.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 9.5e-155 550.8 481 59.7
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.3e-153 546.2 479 61.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 5.2e-153 545.0 428 69.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-152 543.1 392 75.5
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-152 542.7 486 64.2
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.4e-150 535.0 465 61.9
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 2.3e-148 529.6 471 58.6
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 8.9e-145 517.7 417 63.8
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 3.4e-144 515.8 465 60.0
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-144 515.0 384 75.3
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 7.5e-144 514.6 469 56.9
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 9.5e-139 497.7 472 54.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.3e-132 476.5 472 53.6
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 7.8e-125 451.4 469 53.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.5e-123 447.2 365 66.0
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 9.0e-121 438.0 365 63.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.7e-119 433.7 321 66.7
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 6.4e-119 431.8 498 49.4
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 8.4e-119 431.4 496 49.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.1e-116 422.2 478 49.4
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.2e-114 415.2 263 83.3
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-109 399.4 478 49.6
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 3.7e-90 336.3 334 54.8
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-83 313.2 464 40.5
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 9.7e-83 311.6 444 42.8
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.6e-77 293.1 494 38.5
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.7e-66 256.5 189 69.3
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 4.8e-58 229.6 497 34.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.1e-49 198.7 131 74.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-44 184.9 299 37.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.1e-41 175.3 114 78.9
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.8e-36 157.9 161 55.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.0e-31 139.8 72 93.1
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.6e-24 118.2 183 41.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 5.1e-23 113.2 115 48.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.2e-21 108.6 90 60.0
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-20 104.8 178 41.0
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.9e-18 97.4 229 34.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.6e-16 91.7 72 61.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.5e-11 75.1 66 50.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.1e-09 68.9 46 71.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.6e-08 63.5 66 45.5
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.7e-07 61.6 68 48.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 3.3e-06 57.4 27 96.3


User provided reference genes

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