Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1443.7 717 100.0
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1435.6 717 99.2
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1433.3 717 98.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1404.0 717 96.9
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1300.4 733 89.9
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1296.6 717 89.8
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1226.1 715 84.8
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1211.4 716 83.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1205.3 716 83.8
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1154.0 717 79.8
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1138.3 717 78.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 699 79.5
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1132.5 714 78.4
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1130.2 717 78.4
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1129.4 717 78.4
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1126.7 717 78.2
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1125.9 717 77.8
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1123.2 717 78.0
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1122.5 709 78.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1121.7 716 77.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1121.3 709 78.1
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1119.0 704 78.0
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1115.5 709 77.4
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1114.4 701 78.3
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1109.4 718 77.2
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1102.4 713 76.7
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 709 76.0
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1097.8 717 76.8
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1097.0 713 76.0
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1095.5 708 76.6
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1093.6 715 75.2
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 704 75.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1090.9 713 75.7
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 719 75.9
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 711 75.5
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 709 77.0
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1084.3 715 75.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1083.2 710 75.5
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1080.9 804 69.9
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1080.1 712 75.1
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1078.9 708 76.3
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1078.5 709 75.3
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 743 72.5
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 711 75.0
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 9.8e-312 1073.2 715 75.9
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 9.8e-312 1072.8 708 74.3
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.7e-310 1068.9 708 75.7
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 6.3e-310 1067.0 714 73.7
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.8e-309 1065.4 704 75.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 709 73.9
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 4.5e-308 1060.8 708 74.9
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 7.7e-308 1060.1 698 75.2
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 2.3e-307 1058.5 709 73.8
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 5.5e-306 1053.9 708 74.0
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 5.5e-306 1053.9 709 73.2
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 9.5e-306 1053.1 717 73.6
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.1e-305 1052.0 707 73.3
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 5.2e-304 1047.3 718 71.2
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 8.9e-304 1046.6 705 72.5
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.0e-303 1045.4 730 71.2
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 5.7e-303 1043.9 733 70.5
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.3e-302 1042.7 704 72.2
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.7e-302 1042.3 713 72.8
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.5e-300 1034.6 713 72.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 713 72.5
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 4.7e-297 1024.2 708 72.2
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 671 74.7
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 6.8e-296 1020.4 703 72.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 7.0e-293 1010.4 714 71.6
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 9.2e-293 1010.0 708 71.0
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.7e-292 1008.4 710 70.1
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 7.8e-292 1006.9 708 71.0
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.0e-291 1006.5 708 70.8
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 3.3e-290 1001.5 713 70.7
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.8e-288 995.7 714 70.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.8e-288 995.7 717 69.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.3e-288 995.3 701 71.0
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 8.9e-288 993.4 715 69.7
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 2.6e-287 991.9 717 69.6
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.9e-285 985.7 712 69.7
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 7.0e-285 983.8 701 70.8
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.2e-281 973.0 695 69.1
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.3e-278 963.0 717 70.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 6.4e-278 960.7 789 62.6
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.3e-270 936.4 721 65.5
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 6.4e-270 934.1 753 62.5
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 5.4e-269 931.0 703 65.4
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 3.5e-268 928.3 588 78.1
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 7.8e-268 927.2 713 65.2
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 4.9e-262 907.9 596 75.0
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 7.1e-261 904.0 677 67.7
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.6e-260 901.4 724 63.7
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.4e-256 889.8 565 77.7
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 4.0e-256 888.3 717 63.7
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.8e-251 872.8 712 61.8
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 9.6e-250 867.1 714 61.8
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.3e-243 846.7 541 77.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 5.0e-230 801.6 531 75.5
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.3e-210 735.7 756 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 7.4e-210 734.6 694 54.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.2e-205 719.2 699 52.9
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 6.3e-185 651.7 705 49.4
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.3e-182 643.3 872 42.4
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-173 614.4 444 69.1
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 3.3e-173 612.8 838 42.7
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 2.3e-166 590.1 687 47.3
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.5e-162 577.4 394 72.3
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 3.4e-154 549.7 498 56.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.4e-147 527.7 725 42.5
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 5.3e-147 525.8 745 42.0
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.5e-133 481.1 746 39.4
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 4.9e-129 466.1 707 38.9
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.3e-126 457.2 812 36.1
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.8e-121 439.9 336 68.2
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 7.4e-117 425.6 301 73.1
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.7e-111 407.1 364 58.8
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 5.0e-81 306.6 270 58.1
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-72 278.9 199 68.3
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.8e-63 247.7 192 63.5
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.6e-58 231.9 138 82.6
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 8.6e-57 226.1 162 66.7
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.6e-42 178.7 113 76.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 9.6e-40 169.5 102 79.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.2e-36 158.3 181 55.2
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-34 152.5 120 59.2
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.7e-28 132.1 101 69.3
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.1e-23 115.2 83 66.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 3.6e-23 114.4 61 86.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 6.9e-22 110.2 148 44.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.6e-18 99.0 81 58.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 9.6e-16 89.7 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 5.8e-13 80.5 62 61.3
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.4e-11 75.9 42 81.0
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 4.6e-10 70.9 39 87.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.0e-09 69.7 46 63.0


User provided reference genes

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