Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.1e-109 399.1 202 100.0
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 3.1e-97 358.6 185 97.8
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.1e-97 358.6 185 97.8
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.6e-96 355.5 185 97.3
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 2.7e-93 345.5 185 93.5
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 4.0e-84 315.1 186 83.3
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 4.0e-84 315.1 186 84.4
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 2.8e-82 308.9 186 82.3
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 2.3e-76 289.3 186 76.3
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 8.9e-76 287.3 186 74.7
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 3.2e-73 278.9 186 72.6
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 3.2e-73 278.9 186 72.6
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.1e-73 278.5 186 72.0
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 5.4e-73 278.1 186 73.7
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 2.7e-72 275.8 182 73.1
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 4.5e-72 275.0 186 73.1
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 5.9e-72 274.6 186 72.0
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 1.3e-71 273.5 186 72.6
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.3e-71 272.7 182 74.2
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 5.0e-71 271.6 182 73.1
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 5.0e-71 271.6 182 73.1
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 8.6e-71 270.8 182 72.5
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.9e-70 269.6 186 71.0
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 2.5e-70 269.2 186 71.0
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 3.3e-70 268.9 186 72.6
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 1.2e-69 266.9 182 71.4
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 2.1e-69 266.2 185 73.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.1e-69 266.2 186 69.4
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 8.0e-69 264.2 186 70.4
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.0e-68 263.8 182 71.4
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.0e-68 263.8 186 70.4
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.8e-68 263.1 186 69.9
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 5.2e-68 261.5 186 70.4
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 6.8e-68 261.2 185 69.7
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 8.9e-68 260.8 182 69.8
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 8.9e-68 260.8 182 68.7
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.9e-68 260.8 187 72.2
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.9e-68 260.8 187 72.2
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.2e-67 260.4 185 69.7
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.2e-67 260.4 182 70.3
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 2.0e-67 259.6 182 69.8
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.6e-67 259.2 186 68.8
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 7.5e-67 257.7 182 68.1
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 7.5e-67 257.7 186 69.9
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.2e-66 256.1 186 67.7
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.9e-66 255.8 186 70.4
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.7e-66 255.4 187 69.0
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 6.4e-66 254.6 186 69.4
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 8.3e-66 254.2 185 66.5
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 8.3e-66 254.2 185 65.4
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.4e-65 253.4 186 68.3
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.4e-65 253.4 201 63.7
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.9e-65 253.1 186 68.3
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.4e-65 252.7 185 69.2
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 4.1e-65 251.9 185 65.9
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 5.4e-65 251.5 186 68.8
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 5.4e-65 251.5 185 66.5
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 7.0e-65 251.1 187 69.0
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 7.0e-65 251.1 186 69.4
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 7.0e-65 251.1 185 66.5
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 7.0e-65 251.1 186 66.1
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 9.2e-65 250.8 187 69.0
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.2e-64 250.4 183 68.9
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 1.2e-64 250.4 187 66.3
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 3.5e-64 248.8 206 61.7
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 4.6e-64 248.4 186 65.6
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 6.0e-64 248.1 186 66.1
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 6.0e-64 248.1 186 66.7
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 7.8e-64 247.7 191 63.4
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.0e-63 247.3 185 68.6
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 1.0e-63 247.3 185 67.6
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.0e-63 247.3 186 67.7
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 3.0e-63 245.7 186 67.7
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 3.0e-63 245.7 185 67.6
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 3.0e-63 245.7 186 66.7
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 3.9e-63 245.4 186 64.0
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 8.6e-63 244.2 186 67.2
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.9e-62 243.0 183 65.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 1.9e-62 243.0 181 67.4
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 2.5e-62 242.7 182 66.5
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 7.3e-62 241.1 186 66.1
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 6.2e-61 238.0 186 65.1
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 6.2e-61 238.0 213 60.1
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 1.1e-60 237.3 211 61.1
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 1.1e-60 237.3 185 65.9
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.1e-60 237.3 186 65.6
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.4e-60 236.9 186 65.1
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.4e-60 236.9 182 64.8
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 3.1e-60 235.7 204 58.3
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 3.7e-58 228.8 199 58.3
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 8.3e-58 227.6 148 73.6
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.0e-55 220.7 148 72.3
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 6.6e-55 218.0 151 69.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.2e-51 207.2 147 67.3
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 2.0e-51 206.5 146 66.4
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 5.8e-51 204.9 185 60.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.6e-45 185.7 148 60.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.0e-43 179.9 183 55.2
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 5.8e-43 178.3 147 61.2
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.3e-42 177.2 182 48.9
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 5.1e-39 165.2 186 46.8
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 2.5e-38 162.9 156 55.1
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 3.3e-38 162.5 98 77.6
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 5.6e-38 161.8 135 60.0
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.4e-36 156.4 239 41.8
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.2e-35 154.1 149 55.7
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.4e-33 146.4 136 55.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 3.2e-33 146.0 181 42.5
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 4.6e-32 142.1 175 46.9
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 2.5e-30 136.3 177 41.8
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.4e-27 125.9 92 65.2
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.2e-19 100.9 89 56.2
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.9e-18 95.5 73 58.9
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.1e-17 94.4 85 56.5
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 7.1e-17 91.7 70 74.3
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 2.5e-14 83.2 92 54.3
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 6.2e-13 78.6 59 61.0
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.4e-12 76.6 85 48.2
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.2e-11 74.3 181 27.6
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 5.8e-11 72.0 162 31.5
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 9.3e-09 64.7 195 26.2
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.0e-07 61.2 38 71.1
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.1e-07 58.9 64 53.1
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.1e-06 57.8 174 28.2


User provided reference genes

Program Settings