Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0573 Fragaria x ananassa HOM05D003334 ORTHO05D210388 4.0e-93 344.7 171 100.0
FAN07G2197 Fragaria x ananassa HOM05D015236 ORTHO05D025507 3.9e-32 142.1 83 88.0
FAN21G0811 Fragaria x ananassa HOM05D015236 ORTHO05D025507 4.3e-31 138.7 74 93.2
FAN05G4898 Fragaria x ananassa HOM05D015236 ORTHO05D025507 6.9e-29 131.3 74 90.5
FvH4_1g01910 Fragaria vesca HOM05D001077 ORTHO05D001053 8.7e-24 114.4 75 77.3
FvH4_6g19740 Fragaria vesca HOM05D015236 ORTHO05D025507 8.7e-24 114.4 109 62.4
FAN19G0001 Fragaria x ananassa HOM05D001077 ORTHO05D001053 8.7e-24 114.4 75 77.3
FAN28G1263 Fragaria x ananassa HOM05D001077 ORTHO05D001053 8.7e-24 114.4 75 77.3
FAN23G2584 Fragaria x ananassa HOM05D001077 ORTHO05D001053 1.1e-23 114.0 75 77.3
FAN09G3850 Fragaria x ananassa HOM05D015236 ORTHO05D025507 4.3e-23 112.1 79 75.9
FAN17G2688 Fragaria x ananassa HOM05D015236 ORTHO05D200916 2.0e-20 103.2 66 80.3
FAN28G0405 Fragaria x ananassa HOM05D015236 ORTHO05D206083 2.2e-19 99.8 61 82.0
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 2.1e-14 83.2 84 50.0
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 2.1e-14 83.2 84 51.2
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 3.7e-14 82.4 84 51.2
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 6.2e-14 81.6 84 50.0
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 6.2e-14 81.6 84 51.2
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 8.2e-14 81.3 84 50.0
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 8.2e-14 81.3 84 50.0
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 8.2e-14 81.3 84 50.0
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.1e-13 80.9 84 50.0
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 1.1e-13 80.9 84 48.8
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 1.1e-13 80.9 84 50.0
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 1.1e-13 80.9 84 50.0
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 1.4e-13 80.5 84 50.0
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 1.4e-13 80.5 102 44.1
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 48.8
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 1.8e-13 80.1 87 46.0
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 48.8
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 1.8e-13 80.1 84 50.0
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 2.4e-13 79.7 84 50.0
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 2.4e-13 79.7 84 48.8
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 2.4e-13 79.7 84 50.0
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 2.4e-13 79.7 84 50.0
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 2.4e-13 79.7 84 50.0
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 48.8
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 50.0
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 3.1e-13 79.3 84 47.6
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 4.1e-13 79.0 87 46.0
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 4.1e-13 79.0 84 47.6
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 4.1e-13 79.0 84 50.0
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 4.1e-13 79.0 41 82.9
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 4.1e-13 79.0 84 50.0
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 4.1e-13 79.0 84 48.8
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 4.1e-13 79.0 84 48.8
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 4.1e-13 79.0 70 54.3
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 5.3e-13 78.6 84 48.8
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 5.3e-13 78.6 84 48.8
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 5.3e-13 78.6 84 47.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 5.3e-13 78.6 84 47.6
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 5.3e-13 78.6 84 48.8
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 48.8
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 50.0
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 48.8
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 46.4
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 48.8
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 6.9e-13 78.2 84 47.6
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 9.0e-13 77.8 102 43.1
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 9.0e-13 77.8 102 43.1
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 9.0e-13 77.8 84 47.6
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 9.0e-13 77.8 84 47.6
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 9.0e-13 77.8 84 47.6
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 9.0e-13 77.8 84 48.8
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
BolC3t16391H Brassica oleracea HOM05D003334 ORTHO05D004076 1.2e-12 77.4 54 64.8
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 47.6
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 46.4
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 1.2e-12 77.4 84 45.2
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-12 77.0 87 42.5
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 47.6
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 47.6
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 46.4
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 47.6
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 47.6
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.5e-12 77.0 84 47.6
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 48.8
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 47.6
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 45.2
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 47.6
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 47.6
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 2.0e-12 76.6 84 47.6
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 2.6e-12 76.3 84 46.4
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 2.6e-12 76.3 84 45.2
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 3.4e-12 75.9 87 44.8
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 3.4e-12 75.9 87 44.8
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 3.4e-12 75.9 84 46.4
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 3.4e-12 75.9 84 45.2
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 3.4e-12 75.9 84 46.4
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 4.5e-12 75.5 84 44.0
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 4.5e-12 75.5 84 46.4
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 4.5e-12 75.5 84 45.2
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 5.8e-12 75.1 85 43.5
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 5.8e-12 75.1 39 82.1
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 5.8e-12 75.1 93 44.1
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 5.8e-12 75.1 84 48.8
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 5.8e-12 75.1 84 46.4
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 5.8e-12 75.1 84 46.4
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 5.8e-12 75.1 84 46.4
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 5.8e-12 75.1 84 46.4
FAN01G1786 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.0e-11 74.3 38 86.8
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.0e-11 74.3 84 45.2
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 1.0e-11 74.3 84 44.0
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 1.0e-11 74.3 84 45.2
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 1.3e-11 73.9 61 54.1
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.3e-11 73.9 84 45.2
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.3e-11 73.9 84 46.4
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 1.3e-11 73.9 84 46.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-11 73.6 102 41.2
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-11 73.6 84 47.6
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 1.7e-11 73.6 84 46.4
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 2.2e-11 73.2 39 79.5
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.2e-11 73.2 84 45.2
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 2.9e-11 72.8 84 46.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.9e-11 72.8 84 46.4
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 3.8e-11 72.4 81 45.7
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 3.8e-11 72.4 84 44.0
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 3.8e-11 72.4 81 43.2
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 6.5e-11 71.6 84 44.0
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 8.4e-11 71.2 84 41.7
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 1.1e-10 70.9 84 45.2
SGA_v2.0_scaffold269G46297 Striga asiatica HOM05D003334 ORTHO05D004076 1.1e-10 70.9 36 80.6
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 1.4e-10 70.5 84 45.2
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 1.4e-10 70.5 83 43.4
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 1.9e-10 70.1 84 41.7
FAN23G2719 Fragaria x ananassa HOM05D015236 ORTHO05D209733 3.2e-10 69.3 88 50.0
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 7.1e-10 68.2 66 48.5
RcHm_v2.0_Chr2g0086921 Rosa chinensis HOM05D001077 ORTHO05D001053 9.3e-10 67.8 69 53.6
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.2e-09 67.4 84 40.5
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 1.6e-09 67.0 42 76.2
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 6.1e-09 65.1 36 80.6
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 1.0e-08 64.3 36 77.8
MD02G1017200 Malus domestica HOM05D001077 ORTHO05D001053 1.5e-07 60.5 75 46.7
MD15G1161600 Malus domestica HOM05D001077 ORTHO05D001053 7.4e-07 58.2 75 44.0
Manes.04G107200 Manihot esculenta HOM05D001077 ORTHO05D001053 2.8e-06 56.2 65 40.0
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 4.8e-06 55.5 59 42.4


User provided reference genes

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