Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.2e-294 1015.8 514 100.0
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.7e-243 844.7 448 97.3
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.2e-232 808.9 448 93.1
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 9.1e-226 786.9 453 89.8
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.8e-224 781.6 453 89.6
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 6.3e-219 764.2 453 88.1
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 1.0e-208 730.3 460 83.3
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 3.4e-188 662.1 350 97.1
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 9.2e-162 574.3 463 67.0
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 6.8e-157 558.1 460 65.4
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 1.3e-131 474.2 462 57.1
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 4.3e-127 459.1 460 54.6
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 2.1e-121 440.3 444 55.6
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 2.7e-121 439.9 447 54.6
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.8e-120 437.2 459 54.0
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 3.0e-120 436.4 448 56.7
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 2.8e-118 429.9 449 54.3
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 4.8e-118 429.1 457 53.0
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 1.8e-117 427.2 447 55.0
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 4.1e-117 426.0 460 52.8
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 3.8e-115 419.5 460 52.6
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 6.1e-113 412.1 480 51.0
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 3.3e-111 406.4 462 50.6
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 4.8e-110 402.5 462 50.6
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 6.3e-110 402.1 460 51.3
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 3.4e-108 396.4 469 49.0
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 8.5e-107 391.7 480 48.5
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 2.5e-106 390.2 460 50.7
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 7.2e-106 388.7 447 49.2
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 2.7e-105 386.7 463 47.7
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 3.6e-105 386.3 394 53.3
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 1.8e-104 384.0 449 49.9
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 1.5e-103 380.9 457 50.3
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 2.6e-103 380.2 449 49.7
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.8e-102 376.7 465 47.7
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 1.1e-101 374.8 468 47.2
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 7.0e-101 372.1 443 48.8
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 1.5e-100 370.9 461 46.4
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 2.6e-100 370.2 461 46.0
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 4.5e-100 369.4 455 46.4
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 5.9e-100 369.0 465 46.9
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 2.2e-99 367.1 472 46.8
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 2.9e-99 366.7 457 48.8
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 1.1e-98 364.8 464 45.5
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 1.9e-98 364.0 462 47.6
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 4.2e-98 362.8 468 46.2
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 1.8e-96 357.5 449 47.2
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 3.3e-95 353.2 453 45.7
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 5.7e-95 352.4 495 44.6
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 1.7e-94 350.9 444 46.2
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 2.2e-94 350.5 452 47.1
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 2.8e-94 350.1 429 48.7
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 6.3e-94 349.0 445 46.3
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 6.3e-94 349.0 444 46.2
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 2.4e-93 347.1 362 54.7
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 7.0e-93 345.5 397 50.6
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 1.2e-92 344.7 457 44.6
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.6e-92 343.6 345 55.4
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 5.9e-92 342.4 439 46.2
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 1.3e-91 341.3 451 45.0
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 1.7e-91 340.9 462 45.2
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 6.5e-91 339.0 472 45.3
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 8.5e-91 338.6 439 45.1
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 1.1e-90 338.2 465 44.3
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 2.5e-90 337.0 448 44.9
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 2.5e-90 337.0 441 45.6
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 4.2e-90 336.3 449 45.7
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 5.5e-90 335.9 421 48.2
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 9.4e-90 335.1 449 45.7
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 1.2e-89 334.7 449 45.4
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 1.6e-89 334.3 450 45.3
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 2.7e-89 333.6 443 45.6
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 2.7e-89 333.6 448 45.3
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 4.7e-89 332.8 444 45.3
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 1.4e-88 331.3 490 42.2
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 1.4e-88 331.3 442 45.0
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 4.4e-87 326.2 450 44.0
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 1.3e-86 324.7 473 42.9
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 2.2e-86 323.9 463 42.3
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 3.7e-86 323.2 458 42.6
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 1.6e-84 317.8 445 44.7
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 5.9e-84 315.8 321 57.3
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 5.9e-84 315.8 449 43.9
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 7.7e-84 315.5 466 41.0
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 1.3e-83 314.7 436 43.1
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.1e-82 311.6 463 43.6
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 3.6e-81 306.6 453 42.4
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 1.8e-80 304.3 442 43.4
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 3.4e-79 300.1 444 39.6
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 4.4e-79 299.7 446 43.5
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 5.7e-79 299.3 476 40.1
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 2.2e-78 297.4 448 39.1
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 3.7e-78 296.6 441 42.0
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 2.4e-69 267.3 289 50.9
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 4.3e-66 256.5 353 48.2
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 5.8e-63 246.1 312 44.2
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 1.6e-60 238.0 447 35.8
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 2.1e-57 227.6 441 35.6
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 7.3e-50 202.6 332 40.4
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 7.8e-44 182.6 200 48.5
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 8.1e-41 172.6 149 54.4
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 2.2e-38 164.5 228 47.4
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.9e-34 151.4 118 59.3
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.6e-33 148.3 118 58.5
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.6e-33 148.3 118 58.5
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 3.5e-28 130.6 221 39.4
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.3e-26 123.6 118 51.7
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 4.0e-24 117.1 78 71.8
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.5e-23 113.6 127 48.8
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 7.9e-20 102.8 428 24.5
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 8.7e-19 99.4 106 50.0
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.3e-18 97.1 214 30.4
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 4.3e-18 97.1 214 30.4
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 5.6e-18 96.7 259 31.7
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 6.2e-17 93.2 466 23.2
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.8e-16 91.7 102 54.9
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 8.4e-14 82.8 55 69.1
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 1.8e-11 75.1 461 23.0
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 1.5e-10 72.0 78 46.2
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 4.8e-09 67.0 98 36.7
RcHm_v2.0_Chr3g0477111 Rosa chinensis HOM05D006143 ORTHO05D007587 8.2e-09 66.2 35 91.4
Actinidia07619 Actinidia chinensis HOM05D006143 ORTHO05D007587 3.4e-07 60.8 113 37.2
arahy.Tifrunner.gnm1.ann1.SUI2IU Arachis hypogaea HOM05D006143 ORTHO05D007587 1.0e-06 59.3 49 57.1
SMO117G0244 Selaginella moellendorffii HOM05D006143 ORTHO05D007587 1.0e-06 59.3 89 37.1


User provided reference genes

Program Settings