Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.4e-132 474.9 232 100.0
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.0e-127 459.1 232 96.6
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 6.3e-126 454.1 232 95.7
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 9.4e-114 413.7 238 87.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.6e-100 369.8 185 98.4
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.8e-99 365.2 185 97.8
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.0e-96 357.1 242 74.0
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.1e-90 337.0 249 71.1
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.3e-83 312.8 239 67.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 5.6e-82 308.1 242 65.7
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 9.5e-82 307.4 241 65.6
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.2e-81 307.0 241 64.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 2.1e-81 306.2 216 70.8
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 6.2e-81 304.7 248 62.9
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 6.2e-81 304.7 218 72.0
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 8.0e-81 304.3 245 63.3
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 6.8e-80 301.2 209 72.2
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 3.4e-79 298.9 249 63.5
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 7.5e-79 297.7 223 67.7
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.7e-78 296.6 213 70.4
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.9e-78 295.8 243 62.1
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 8.3e-78 294.3 243 61.7
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 1.4e-77 293.5 194 73.2
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 3.2e-77 292.4 194 72.7
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.2e-77 292.4 194 72.7
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 3.2e-77 292.4 191 73.3
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 4.1e-77 292.0 188 74.5
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 4.1e-77 292.0 194 73.2
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 4.1e-77 292.0 194 73.2
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 7.0e-77 291.2 194 72.2
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 7.0e-77 291.2 246 62.2
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.7e-76 289.3 213 69.0
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 6.0e-76 288.1 194 72.2
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 6.0e-76 288.1 243 61.3
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.0e-75 287.3 239 61.9
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 3.9e-75 285.4 204 69.6
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 3.9e-75 285.4 193 73.1
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 6.6e-75 284.6 180 77.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 6.6e-75 284.6 183 75.4
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 8.6e-75 284.3 194 71.6
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.1e-74 283.9 175 78.3
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.5e-74 283.5 199 71.4
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 2.5e-74 282.7 172 78.5
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.2e-73 280.4 173 76.9
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 1.6e-73 280.0 173 76.3
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 2.8e-73 279.3 158 82.9
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 3.6e-73 278.9 294 52.4
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 6.2e-73 278.1 173 76.3
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 8.1e-73 277.7 212 67.0
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.1e-72 277.3 171 77.8
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 1.4e-72 276.9 173 76.9
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.8e-72 276.6 211 65.9
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.3e-72 276.2 167 77.8
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 5.2e-72 275.0 159 82.4
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 5.2e-72 275.0 159 82.4
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 8.9e-72 274.2 286 53.5
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.4e-71 272.3 173 75.1
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 3.4e-71 272.3 171 76.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 5.8e-71 271.6 214 65.4
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.7e-70 270.0 159 81.1
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 1.7e-70 270.0 190 68.4
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 2.2e-70 269.6 173 73.4
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 6.4e-70 268.1 183 69.4
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.4e-69 266.9 194 68.6
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.4e-69 266.9 158 77.8
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 1.4e-69 266.9 158 77.8
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 2.4e-69 266.2 198 66.7
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 4.1e-69 265.4 186 70.4
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 4.1e-69 265.4 200 68.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 9.2e-69 264.2 153 80.4
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 9.2e-69 264.2 227 60.4
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.1e-68 263.1 158 77.8
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.1e-68 263.1 159 80.5
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 2.1e-68 263.1 155 80.0
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 4.6e-68 261.9 161 74.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.0e-68 261.5 177 71.2
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 7.8e-68 261.2 155 78.7
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 3.0e-67 259.2 153 79.7
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 3.9e-67 258.8 167 74.3
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 5.1e-67 258.5 157 77.1
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 6.6e-67 258.1 159 75.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 6.6e-67 258.1 155 77.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.6e-66 255.0 153 79.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.1e-65 253.1 151 78.1
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 4.7e-65 251.9 188 66.5
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 6.2e-65 251.5 159 73.6
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 8.1e-65 251.1 159 73.6
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 1.4e-64 250.4 167 74.9
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.8e-64 250.0 156 75.6
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 1.5e-63 246.9 192 65.1
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 2.0e-63 246.5 237 55.7
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.0e-63 246.5 149 77.2
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.0e-63 246.5 181 64.6
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 1.7e-62 243.4 153 73.2
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 6.4e-62 241.5 170 70.0
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 6.4e-62 241.5 155 74.8
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 4.1e-61 238.8 161 72.7
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.7e-60 236.1 156 73.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.3e-59 233.8 153 69.3
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.3e-59 233.8 166 69.3
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.5e-58 230.3 190 62.1
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.4e-55 219.2 143 76.2
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 7.6e-55 218.0 198 57.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 3.8e-54 215.7 182 58.8
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.9e-53 213.4 200 57.0
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.7e-51 206.8 136 75.7
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 5.1e-51 205.3 188 60.6
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.9e-50 203.4 151 63.6
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.3e-50 202.6 162 58.0
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-47 193.7 226 50.9
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 9.9e-47 191.0 143 60.1
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 2.3e-43 179.9 143 64.3
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.0e-39 166.8 161 52.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.4e-37 160.6 87 82.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 8.2e-33 144.8 108 67.6
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.9e-32 141.7 137 56.9
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.9e-32 141.7 137 56.9
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.9e-27 125.9 85 75.3
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 8.7e-27 124.8 107 49.5
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 1.4e-24 117.5 150 44.7
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 5.9e-23 112.1 116 44.8
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 8.5e-22 108.2 120 43.3
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 4.6e-20 102.4 129 38.8
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.8e-16 90.5 77 59.7
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 2.9e-14 83.2 82 50.0
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 6.7e-11 72.0 37 78.4
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 5.7e-10 68.9 42 78.6
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 9.1e-08 61.6 106 35.8
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 8.5e-06 55.1 42 61.9


User provided reference genes

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