Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1628.6 873 100.0
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1520.8 862 95.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 0.0e+00 1461.4 859 91.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1459.5 865 91.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1285.4 724 96.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 0.0e+00 1172.1 923 72.7
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.7e-179 634.0 913 45.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 7.7e-177 625.2 902 46.3
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.7e-150 536.2 673 48.4
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 5.1e-144 516.2 873 42.3
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 4.4e-140 503.1 895 39.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.4e-138 496.1 819 40.5
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.7e-137 493.8 872 40.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 8.7e-136 488.8 909 38.3
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.0e-133 479.9 875 37.8
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.7e-131 474.6 871 37.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.2e-131 474.2 853 39.2
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.1e-130 469.2 877 37.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 7.1e-130 469.2 877 37.2
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.6e-129 468.0 870 38.2
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.0e-128 465.3 872 37.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.7e-128 464.5 869 38.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.8e-126 456.4 867 37.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 8.1e-126 455.7 868 37.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 2.4e-125 454.1 843 38.4
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 9.9e-124 448.7 845 37.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.3e-123 448.4 898 36.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.2e-123 447.6 849 37.8
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.4e-122 444.9 876 36.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.2e-122 443.7 844 37.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 9.3e-122 442.2 847 37.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.7e-121 440.7 869 35.4
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.0e-120 438.7 847 36.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.0e-120 438.7 874 36.6
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 8.7e-120 435.6 861 37.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.1e-119 435.3 861 37.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.8e-118 430.6 868 37.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 6.2e-118 429.5 863 36.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.1e-117 428.7 869 36.4
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.8e-117 427.9 823 36.9
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.5e-116 424.9 833 36.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.5e-116 424.9 655 44.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.5e-116 424.9 847 37.2
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.4e-116 423.7 877 35.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-115 421.8 876 36.1
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-115 421.8 881 35.9
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 5.5e-114 416.4 885 34.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.2e-113 415.2 879 36.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.3e-111 407.1 875 36.3
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.1e-109 402.1 894 34.3
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 3.1e-109 400.6 859 37.1
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.3e-109 399.8 864 34.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.0e-109 399.1 863 34.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.0e-108 397.9 548 44.0
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.8e-107 393.7 667 41.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.9e-106 391.3 868 34.7
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.3e-106 389.0 859 34.3
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.1e-101 375.6 872 34.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 5.9e-100 369.8 848 33.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 7.7e-100 369.4 854 33.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.1e-97 361.3 874 32.4
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 6.1e-97 359.8 868 32.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.3e-96 357.8 866 33.1
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-94 352.1 866 33.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.3e-91 342.0 874 32.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.7e-91 341.7 870 32.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 8.5e-91 339.3 876 32.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.9e-90 338.2 845 32.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-90 337.8 863 32.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.5e-90 337.8 872 33.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 7.2e-90 336.3 418 46.2
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.9e-89 332.8 876 31.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.0e-88 332.4 863 32.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 4.4e-87 327.0 600 35.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.7e-86 323.9 864 30.2
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-86 323.2 423 44.7
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.1e-85 320.9 449 43.7
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.1e-85 320.9 868 30.2
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.1e-85 320.5 432 44.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.6e-84 317.8 841 30.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.6e-84 317.8 862 31.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.6e-84 317.8 844 30.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.9e-84 316.6 840 31.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-83 315.1 919 30.1
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.8e-83 313.9 595 36.3
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-82 312.4 869 29.5
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-81 308.9 865 30.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.0e-80 305.8 838 30.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.0e-80 303.9 881 31.8
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.1e-79 302.4 569 37.1
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.5e-79 302.0 728 34.5
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 7.5e-79 299.7 902 29.8
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.8e-78 297.7 453 40.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 8.2e-78 296.2 632 34.2
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 4.5e-76 290.4 496 38.9
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.0e-75 289.3 461 41.4
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.0e-75 289.3 431 41.5
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.5e-74 285.4 490 40.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.2e-74 284.3 489 40.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-73 282.3 477 40.0
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.6e-73 280.8 449 38.5
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.0e-72 279.3 428 40.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.0e-72 279.3 428 40.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.0e-72 277.7 609 34.8
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.6e-71 274.6 616 33.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 6.3e-70 270.0 428 39.5
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.4e-69 268.1 431 40.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.4e-69 268.1 428 39.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.4e-69 268.1 712 32.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.4e-69 266.9 430 40.5
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.3e-67 262.3 435 40.9
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.8e-67 260.8 812 29.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 4.7e-65 253.8 757 30.5
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.0e-63 248.4 413 39.7
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.1e-61 242.7 427 37.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.8e-61 241.9 720 31.5
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 9.2e-61 239.6 709 29.9
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.2e-60 239.2 675 31.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.2e-60 239.2 772 30.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 3.5e-60 237.7 760 30.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.9e-59 234.6 770 30.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 8.6e-59 233.0 443 36.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.9e-58 231.9 659 32.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 5.6e-58 230.3 536 32.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 9.5e-58 229.6 753 29.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.1e-57 226.9 863 26.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.0e-55 221.9 426 34.3
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.6e-55 221.5 284 48.9
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.4e-55 220.7 763 28.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.5e-52 211.1 414 38.6
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.0e-51 208.0 441 33.8
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.5e-50 205.7 417 34.1
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 9.5e-50 203.0 405 36.5
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.8e-47 193.7 496 32.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 7.5e-47 193.4 588 28.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.7e-43 182.2 264 45.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-40 172.9 416 33.7
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.1e-40 171.4 190 52.1
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.1e-40 171.4 421 31.4
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.2e-39 169.5 490 28.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.7e-38 164.5 379 36.1
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 5.1e-35 154.1 839 23.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 7.6e-31 140.2 380 33.2
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-26 125.6 459 28.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.1e-24 119.8 397 31.2
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.0e-19 103.2 103 50.5
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.8e-17 95.1 120 45.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.8e-15 87.4 483 22.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-13 82.8 72 43.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.9e-11 74.7 408 22.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 5.1e-11 74.3 105 29.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.5e-10 72.0 62 48.4
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.6e-09 68.2 82 39.0
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.6e-09 68.2 71 33.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-08 65.5 108 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 2.2e-06 58.9 401 21.2
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.2e-06 58.9 74 45.9
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.2e-06 58.9 70 32.9
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.9e-06 58.5 64 40.6


User provided reference genes

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