Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.8e-177 624.4 385 100.0
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.5e-151 538.1 350 91.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.2e-147 524.2 350 88.6
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-144 514.2 392 81.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-136 490.0 349 80.8
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-132 474.6 345 84.3
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.7e-121 439.5 352 81.0
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-119 434.1 345 83.8
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-107 392.1 359 61.0
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.1e-101 372.9 213 87.8
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-101 371.3 233 81.1
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 6.2e-86 322.0 269 61.3
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-75 286.2 352 62.2
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-74 284.3 352 61.9
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-74 284.3 352 61.9
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.0e-73 278.9 352 61.4
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-58 230.3 222 81.1
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.4e-55 218.8 316 58.5
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.1e-54 217.2 197 80.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 1.3e-51 208.0 312 56.1
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 8.2e-46 188.7 250 55.6
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-43 180.6 382 35.6
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.8e-43 179.9 310 55.8
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 6.5e-43 179.1 316 52.8
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-43 178.7 376 49.2
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.1e-42 178.3 312 51.9
FAN19G2386 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-41 174.5 96 92.7
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 4.6e-41 172.9 310 54.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 3.0e-40 170.2 301 55.1
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.9e-40 169.9 316 51.6
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.5e-39 167.9 268 57.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.8e-38 163.7 319 37.0
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.1e-37 160.2 367 48.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.2e-36 158.3 235 51.5
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.4e-36 156.8 327 35.5
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.0e-35 155.2 168 53.0
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.7e-35 154.5 300 51.3
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-34 151.8 168 53.0
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.7e-33 146.4 377 45.6
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.8e-32 144.4 289 50.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.8e-32 144.4 289 50.9
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 5.1e-32 142.9 268 34.3
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-31 140.6 377 45.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.4e-29 134.8 150 74.7
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 6.9e-29 132.5 227 59.0
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.5e-28 131.3 149 74.5
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 3.4e-28 130.2 312 44.6
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 7.7e-28 129.0 301 51.2
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.0e-27 128.6 347 40.3
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.7e-27 127.9 186 46.8
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 3.8e-27 126.7 336 38.1
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 5.0e-27 126.3 188 56.9
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.4e-26 124.8 288 49.0
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.6e-25 121.3 151 43.7
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.4e-24 118.2 378 42.3
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-24 117.9 288 48.6
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 2.3e-24 117.5 207 60.4
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.0e-23 114.4 407 27.8
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 9.4e-18 95.5 111 50.5
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.0e-16 90.5 319 44.5
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 3.0e-16 90.5 232 31.9
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 3.0e-16 90.5 316 39.6
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 3.0e-16 90.5 100 53.0
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-15 88.6 54 70.4
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-15 88.6 54 70.4
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.3e-14 85.1 54 68.5
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-14 85.1 54 68.5
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.7e-14 84.7 54 66.7
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.7e-14 84.7 54 68.5
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.2e-14 84.3 54 66.7
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 2.2e-14 84.3 54 66.7
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 64.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 66.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.8e-14 84.0 54 64.8
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 3.7e-14 83.6 54 66.7
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 66.7
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 64.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 64.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 64.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 64.8
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 66.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 4.8e-14 83.2 54 66.7
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 6.3e-14 82.8 54 66.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.1e-13 82.0 54 66.7
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-13 82.0 54 66.7
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.4e-13 81.6 54 63.0
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.4e-13 81.6 54 63.0
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 1.4e-13 81.6 54 64.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.4e-13 81.6 54 64.8
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.4e-13 81.6 54 66.7
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.8e-13 81.3 54 66.7
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.8e-13 81.3 54 66.7
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.4e-13 80.9 54 66.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.4e-13 80.9 54 66.7
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.4e-13 80.9 54 64.8
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 3.1e-13 80.5 54 63.0
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.1e-13 80.5 54 63.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 3.1e-13 80.5 54 63.0
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 4.1e-13 80.1 54 61.1
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 4.1e-13 80.1 54 64.8
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 4.1e-13 80.1 54 64.8
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 4.1e-13 80.1 54 63.0
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.1e-13 80.1 54 64.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 61.1
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 64.8
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 61.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 61.1
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 63.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 66.7
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 5.3e-13 79.7 54 64.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 7.0e-13 79.3 54 63.0
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 7.0e-13 79.3 54 63.0
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 9.1e-13 79.0 313 43.1
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 9.1e-13 79.0 54 63.0
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 9.1e-13 79.0 54 63.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 9.1e-13 79.0 54 63.0
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 9.1e-13 79.0 54 63.0
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 9.1e-13 79.0 54 63.0
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.2e-12 78.6 54 63.0
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.2e-12 78.6 54 64.8
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.2e-12 78.6 54 64.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.6e-12 78.2 54 61.1
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-12 77.8 54 61.1
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.0e-12 77.8 54 61.1
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.0e-12 77.8 54 63.0
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 2.0e-12 77.8 54 61.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.5e-12 77.0 54 64.8
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.5e-12 77.0 54 63.0
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 4.5e-12 76.6 54 59.3
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 4.5e-12 76.6 54 63.0
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 7.7e-12 75.9 54 61.1
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 7.7e-12 75.9 54 61.1
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 7.7e-12 75.9 54 64.8
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-11 74.7 54 59.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 5.0e-11 73.2 54 57.4
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 5.0e-11 73.2 54 57.4
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-10 71.6 54 63.0
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 3.2e-10 70.5 76 59.2
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.2e-10 70.5 94 51.1
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 4.2e-10 70.1 90 53.3
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.2e-10 70.1 93 44.1
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.1e-09 67.8 97 48.5
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 52.8
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 2.7e-09 67.4 89 50.6
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.7e-09 67.4 64 56.2
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.0e-08 65.5 54 57.4
FvH4_4g16141 Fragaria vesca HOM05D003406 ORTHO05D196757 2.3e-08 64.3 71 63.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 5.2e-08 63.2 77 51.9
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 5.2e-08 63.2 77 51.9
MELO3C005825.2 Cucumis melo HOM05D000526 ORTHO05D000956 9.8e-07 58.9 144 28.5
CsaV3_5G001220 Cucumis sativus L. HOM05D000526 ORTHO05D000956 1.3e-06 58.5 144 28.5
Gohir.D11G009900 Gossypium hirsutum HOM05D000526 ORTHO05D000956 1.3e-06 58.5 144 28.5
Gorai.N027300 Gossypium raimondii HOM05D000526 ORTHO05D000956 1.3e-06 58.5 144 28.5
VMungo1215G0045 Vigna mungo HOM05D000526 ORTHO05D000956 4.8e-06 56.6 144 27.1
Phvul.002G037700 Phaseolus vulgaris HOM05D000526 ORTHO05D000956 6.3e-06 56.2 144 27.1
Sed0001741 Sechium edule HOM05D000526 ORTHO05D000956 8.3e-06 55.8 144 27.8
Hund15502 Selenicereus undatus HOM05D000526 ORTHO05D000956 8.3e-06 55.8 144 25.7


User provided reference genes

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