Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3013 Fragaria x ananassa HOM05D001734 ORTHO05D006943 0.0e+00 3850.4 1932 100.0
FvH4_2g15770 Fragaria vesca HOM05D001734 ORTHO05D006943 0.0e+00 3702.9 1947 96.4
FAN20G0548 Fragaria x ananassa HOM05D001734 ORTHO05D006943 0.0e+00 3694.8 1947 96.4
FAN27G0836 Fragaria x ananassa HOM05D001734 ORTHO05D006943 0.0e+00 3670.6 1947 95.8
RcHm_v2.0_Chr6g0279121 Rosa chinensis HOM05D001734 ORTHO05D006943 0.0e+00 3469.9 1950 90.3
MD05G1126600 Malus domestica HOM05D001734 ORTHO05D006943 0.0e+00 2801.9 1960 74.3
FAN24G0945 Fragaria x ananassa HOM05D001734 ORTHO05D006943 0.0e+00 2724.5 1947 75.3
Prupe.8G170300 Prunus persica HOM05D001734 ORTHO05D006943 0.0e+00 2706.8 1858 75.5
Haze_02089 Corylus avellana HOM05D001734 ORTHO05D006943 0.0e+00 2665.6 1961 70.9
Cfa005298 Carpinus fangiana HOM05D001734 ORTHO05D006943 0.0e+00 2654.8 1961 70.6
CiPaw.06G119600 Carya illinoinensis HOM05D001734 ORTHO05D006943 0.0e+00 2617.8 1963 69.8
QL11p052553 Quercus lobata HOM05D001734 ORTHO05D006943 0.0e+00 2533.4 1988 67.4
Manes.04G069900 Manihot esculenta HOM05D001734 ORTHO05D006943 0.0e+00 2498.4 1958 66.6
Dinv14134 Davidia involucrata HOM05D001734 ORTHO05D006943 0.0e+00 2491.5 1961 66.2
Gorai.008G037900 Gossypium raimondii HOM05D001734 ORTHO05D006943 0.0e+00 2474.5 1958 66.2
Gohir.A12G035900 Gossypium hirsutum HOM05D001734 ORTHO05D006943 0.0e+00 2471.0 1958 66.0
TAR628G1453 Trochodendron aralioides HOM05D001734 ORTHO05D006943 0.0e+00 2469.1 1965 66.0
Potri.004G179000 Populus trichocarpa HOM05D001734 ORTHO05D006943 0.0e+00 2459.9 1960 65.4
Sed0017558 Sechium edule HOM05D001734 ORTHO05D006943 0.0e+00 2456.8 1960 64.8
Sabra04G0120500 Salix brachista HOM05D001734 ORTHO05D006943 0.0e+00 2448.7 1960 65.3
TWI79G0733 Tripterygium wilfordii HOM05D001734 ORTHO05D006943 0.0e+00 2446.8 1954 65.6
ClCG02G003850 Citrullus lanatus HOM05D001734 ORTHO05D006943 0.0e+00 2438.7 1965 64.6
CANSAT25G2086 Cannabis sativa HOM05D001734 ORTHO05D006943 0.0e+00 2427.9 1964 64.7
Duzib052G0295 Durio zibethinus HOM05D001734 ORTHO05D006943 0.0e+00 2426.7 1918 66.6
MELO3C013324.2 Cucumis melo HOM05D001734 ORTHO05D006943 0.0e+00 2417.5 1961 64.0
Ciclev10027660m.g Citrus clementina HOM05D001734 ORTHO05D006943 0.0e+00 2414.8 1952 65.2
CsaV3_7G001280 Cucumis sativus L. HOM05D001734 ORTHO05D006943 0.0e+00 2410.9 1965 63.8
CSS0020547 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 0.0e+00 2409.4 1960 64.8
CSS0001027 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 0.0e+00 2408.6 1960 64.8
Actinidia18030 Actinidia chinensis HOM05D001734 ORTHO05D006943 0.0e+00 2390.9 1961 63.7
Rhsim11G0194400 Rhododendron simsii HOM05D001734 ORTHO05D006943 0.0e+00 2382.8 1966 63.2
GSVIVG01023964001 Vitis vinifera HOM05D001734 ORTHO05D006943 0.0e+00 2374.7 1965 63.2
Glyma.10G284200 Glycine max HOM05D001734 ORTHO05D006943 0.0e+00 2357.0 1967 63.4
Lj5A175T98 Lonicera japonica HOM05D001734 ORTHO05D006943 0.0e+00 2340.8 1976 62.0
Lj5g0001935 Lotus japonicus HOM05D001734 ORTHO05D006943 0.0e+00 2340.1 1964 63.0
Nn6g31886 Nelumbo nucifera HOM05D001734 ORTHO05D006943 0.0e+00 2339.7 1961 62.2
Lalb_Chr06g0163781 Lupinus albus HOM05D001734 ORTHO05D006943 0.0e+00 2329.3 1986 62.5
Ca_03288_v3 Cicer arietinum L. HOM05D001734 ORTHO05D006943 0.0e+00 2324.7 1978 62.1
VMungo0720G2261 Vigna mungo HOM05D001734 ORTHO05D006943 0.0e+00 2291.5 1965 62.1
vmacro02297 Vaccinium macrocarpon HOM05D001734 ORTHO05D006943 0.0e+00 2290.4 2009 60.8
Eucgr.I01462 Eucalyptus grandis HOM05D001734 ORTHO05D006943 0.0e+00 2276.1 1958 61.4
PGR142G2610 Punica granatum HOM05D001734 ORTHO05D006943 0.0e+00 2270.0 1981 61.4
arahy.Tifrunner.gnm1.ann1.M4HWYD Arachis hypogaea HOM05D001734 ORTHO05D006943 0.0e+00 2265.3 2013 60.5
Psat6g232760 Pisum sativum HOM05D001734 ORTHO05D006943 0.0e+00 2258.4 1965 60.6
PSO210G4774 Papaver somniferum HOM05D001734 ORTHO05D006943 0.0e+00 2243.4 1960 59.8
PSO170G1896 Papaver somniferum HOM05D001734 ORTHO05D006943 0.0e+00 2239.9 1964 60.0
MBI18_g09841_MAGBIO Magnolia biondii HOM05D001734 ORTHO05D006943 0.0e+00 2234.5 1983 60.4
Aqoxy5G01087 Aquilegia oxysepala HOM05D001734 ORTHO05D006943 0.0e+00 2231.1 1962 61.1
Medtr1g113830 Medicago truncatula HOM05D001734 ORTHO05D006943 0.0e+00 2226.1 1970 59.7
Sopen01g053910 Solanum pennellii HOM05D001734 ORTHO05D006943 0.0e+00 2215.7 1969 59.8
Solyc01g111870.3 Solanum lycopersicum HOM05D001734 ORTHO05D006943 0.0e+00 2212.6 1970 59.8
CAN.G588.109 Capsicum annuum HOM05D001734 ORTHO05D006943 0.0e+00 2206.8 1969 59.5
Peaxi162Scf00362g00442 Petunia axillaris HOM05D001734 ORTHO05D006943 0.0e+00 2194.1 1967 59.5
DCAR_022421 Daucus carota HOM05D001734 ORTHO05D006943 0.0e+00 2191.4 1967 59.2
Hund00010 Selenicereus undatus HOM05D001734 ORTHO05D006943 0.0e+00 2187.5 1963 59.2
Cc09_g10400 Coffea canephora HOM05D001734 ORTHO05D006943 0.0e+00 2184.8 1959 59.2
Migut.B00045 Erythranthe guttata HOM05D001734 ORTHO05D006943 0.0e+00 2152.9 1962 58.6
AUR62010002 Chenopodium quinoa HOM05D001734 ORTHO05D006943 0.0e+00 2138.2 1953 58.0
HanXRQChr05g0141851 Helianthus annuus HOM05D001734 ORTHO05D006943 0.0e+00 2129.4 1955 58.7
Lsat_1_v5_gn_3_6601 Lactuca sativa HOM05D001734 ORTHO05D006943 0.0e+00 2119.7 1962 58.6
Gohir.D12G036700 Gossypium hirsutum HOM05D001734 ORTHO05D006943 0.0e+00 2113.6 1750 63.8
SGA_v2.0_scaffold32G13315 Striga asiatica HOM05D001734 ORTHO05D006943 0.0e+00 2090.1 1974 56.4
AUR62012990 Chenopodium quinoa HOM05D001734 ORTHO05D006943 0.0e+00 2084.7 1957 56.9
EL10Ac9g21328 Beta vulgaris HOM05D001734 ORTHO05D006943 0.0e+00 2080.8 1965 56.7
Hma1.2p1_0032F.1_g019090 Hydrangea macrophylla HOM05D001734 ORTHO05D006943 0.0e+00 2074.7 1671 64.4
CARHR115960 Cardamine hirsuta HOM05D001734 ORTHO05D006943 0.0e+00 2065.4 1958 56.5
Thhalv10027615m.g Eutrema salsugineum HOM05D001734 ORTHO05D006943 0.0e+00 2051.6 1961 56.8
A04p15830 Brassica napus HOM05D001734 ORTHO05D006943 0.0e+00 2049.2 1953 56.1
BraA04t17214Z Brassica rapa HOM05D000482 ORTHO05D006943 0.0e+00 2049.2 1953 56.1
BolC4t26623H Brassica oleracea HOM05D001734 ORTHO05D006943 0.0e+00 2048.9 1954 56.2
C04p50230 Brassica napus HOM05D001734 ORTHO05D006943 0.0e+00 2047.3 1954 56.2
AL7G48900 Arabidopsis lyrata HOM05D001734 ORTHO05D006943 0.0e+00 2044.6 1960 56.3
Sp4g00080 Schrenkiella parvula HOM05D001734 ORTHO05D006943 0.0e+00 2043.9 1961 56.5
ECA234G4688 Erigeron canadensis HOM05D001734 ORTHO05D006943 0.0e+00 2042.7 1968 56.5
AT5G40820 Arabidopsis thaliana HOM05D001734 ORTHO05D006943 0.0e+00 2020.4 1961 55.7
Aa31LG7G14750 Aethionema arabicum HOM05D001734 ORTHO05D006943 0.0e+00 2003.0 1963 55.2
HPP92_022388 Vanilla planifolia HOM05D001734 ORTHO05D006943 0.0e+00 1971.4 1973 54.2
Thecc.02G053500 Theobroma cacao HOM05D001734 ORTHO05D006943 0.0e+00 1913.7 1446 69.7
Sc18g0006200 Simmondsia chinensis HOM05D001734 ORTHO05D006943 0.0e+00 1897.5 1713 59.4
BcaB06g27763 Brassica carinata HOM05D001734 ORTHO05D006943 0.0e+00 1851.6 1948 53.3
ATR0661G423 Amborella trichopoda HOM05D001734 ORTHO05D006943 0.0e+00 1838.9 1877 52.8
Zm00001eb228310 Zea mays HOM05D001734 ORTHO05D006943 0.0e+00 1799.6 1979 50.7
Oeu028956.2 Olea europaea HOM05D001734 ORTHO05D006943 0.0e+00 1779.6 2016 51.3
Ah.01g023340 Amaranthus hybridus HOM05D001734 ORTHO05D006943 0.0e+00 1649.0 1833 51.3
Carub.0008s0072 Capsella rubella HOM05D001734 ORTHO05D006943 0.0e+00 1637.5 1486 59.4
Phvul.007G017000 Phaseolus vulgaris HOM05D001734 ORTHO05D006943 0.0e+00 1629.4 1287 67.0
MD10G1129700 Malus domestica HOM05D001734 ORTHO05D006943 0.0e+00 1621.7 1276 69.2
Cpa.g.sc20.125 Carica papaya HOM05D001734 ORTHO05D006943 0.0e+00 1548.5 1565 54.8
SEGI_35062 Sequoiadendron giganteum HOM05D001734 ORTHO05D006943 0.0e+00 1464.5 1715 46.4
unitig_21.g20845 Utricularia gibba HOM05D001734 ORTHO05D006943 0.0e+00 1430.6 1940 45.5
Mapoly0026s0077 Marchantia polymorpha HOM05D001734 ORTHO05D006943 0.0e+00 1270.8 2037 39.0
Pp3c6_3460 Physcomitrium patens HOM05D001734 ORTHO05D006943 0.0e+00 1244.2 2042 38.7
SGA_v2.0_scaffold6G03244 Striga asiatica HOM05D001734 ORTHO05D006943 0.0e+00 1168.7 865 70.2
Aa31LG7G15750 Aethionema arabicum HOM05D001734 ORTHO05D006943 0.0e+00 1167.9 1958 39.2
COL.COLO4_18014 Corchorus olitorius HOM05D001734 ORTHO05D006943 0.0e+00 1156.7 1934 40.5
CDE09G0008 Ceratophyllum demersum HOM05D001734 ORTHO05D006943 0.0e+00 1122.8 865 66.1
Nitab4.5_0004557g0050 Nicotiana tabacum HOM05D001734 ORTHO05D006943 2.2e-296 1023.5 1164 49.2
Nitab4.5_0004867g0090 Nicotiana tabacum HOM05D001734 ORTHO05D006943 1.6e-283 980.7 1139 48.5
TPR.G2476 Trifolium pratense HOM05D001734 ORTHO05D006943 1.6e-275 954.1 1216 47.0
CBR_g6357 Chara braunii HOM05D001734 ORTHO05D006943 3.6e-267 926.4 2045 33.1
SMO203G0188 Selaginella moellendorffii HOM05D001734 ORTHO05D006943 1.4e-258 897.9 1198 43.2
QL11p052526 Quercus lobata HOM05D001734 ORTHO05D006943 3.3e-244 850.1 789 60.3
TPR.G2496 Trifolium pratense HOM05D001734 ORTHO05D006943 3.0e-221 773.9 539 73.1
AagrBONN_evm.TU.Sc2ySwM_340.34 Anthoceros agrestis HOM05D001734 ORTHO05D006943 1.8e-186 658.3 1367 33.4
MD10G1129800 Malus domestica HOM05D001734 ORTHO05D006943 1.0e-176 625.9 561 60.2
Atru.chr5.3458 Acer truncatum HOM05D001734 ORTHO05D006943 3.1e-154 551.2 380 75.0
Phvul.007G016800 Phaseolus vulgaris HOM05D001734 ORTHO05D006943 6.4e-139 500.4 475 55.4
TPR.G2477 Trifolium pratense HOM05D001734 ORTHO05D006943 8.9e-117 426.8 397 55.7
Gohir.D12G036650 Gossypium hirsutum HOM05D001734 ORTHO05D006943 5.7e-87 327.8 192 83.9
TPR.G13225 Trifolium pratense HOM05D001734 ORTHO05D006943 1.1e-85 323.6 213 73.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.3e-80 306.6 887 28.4
Lj1g0005537 Lotus japonicus HOM05D001873 ORTHO05D001976 9.7e-79 300.4 313 52.1
Cre10.g467200 Chlamydomonas reinhardtii HOM05D001734 ORTHO05D006943 9.1e-77 293.9 1015 26.7
TPR.G2452 Trifolium pratense HOM05D001734 ORTHO05D023218 2.5e-66 259.2 270 48.9
COL.COLO4_36420 Corchorus olitorius HOM05D001734 ORTHO05D006943 3.7e-54 218.8 628 32.3
Psat2g049960 Pisum sativum HOM05D001734 ORTHO05D026067 1.5e-50 206.8 198 56.1
CSS0028723 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D006943 9.8e-47 194.1 153 64.1
PGSC0003DMG402018643 Solanum tuberosum HOM05D001734 ORTHO05D006943 6.3e-46 191.4 138 70.3
PSO421G0641 Papaver somniferum HOM05D001734 ORTHO05D006943 6.1e-41 174.9 150 59.3
vmacro02070 Vaccinium macrocarpon HOM05D001734 ORTHO05D006943 5.0e-35 155.2 146 60.3
SEGI_36815 Sequoiadendron giganteum HOM05D001734 ORTHO05D006943 2.8e-33 149.4 190 41.1
CSS0005128 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 3.6e-33 149.1 111 67.6
CSS0006982 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D000417 3.6e-33 149.1 153 54.2
QL11p050057 Quercus lobata HOM05D001734 ORTHO05D006943 7.0e-29 134.8 396 31.1
AL2G10240 Arabidopsis lyrata HOM05D001734 ORTHO05D006943 4.6e-28 132.1 180 43.3
Cfa005306 Carpinus fangiana HOM05D001734 ORTHO05D023218 4.0e-24 119.0 90 63.3
PSO170G5954 Papaver somniferum HOM05D001734 ORTHO05D023218 5.2e-24 118.6 148 40.5
AL7G48800 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.5e-23 117.1 103 56.3
ATR0661G239 Amborella trichopoda HOM05D001734 ORTHO05D006943 5.0e-19 102.1 97 52.6
PGSC0003DMG401018643 Solanum tuberosum HOM05D001734 ORTHO05D006943 1.4e-16 94.0 76 56.6
SEGI_26648 Sequoiadendron giganteum HOM05D001734 ORTHO05D006943 3.1e-16 92.8 108 50.0
Phvul.007G016900 Phaseolus vulgaris HOM05D001734 ORTHO05D023218 4.9e-14 85.5 74 56.8
GSVIVG01006509001 Vitis vinifera HOM05D027982 ORTHO05D026067 4.9e-14 85.5 83 59.0
GSVIVG01006131001 Vitis vinifera HOM05D027982 ORTHO05D026067 1.4e-13 84.0 59 74.6
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 1.1e-08 67.8 304 24.7
Atru.chr2.2183 Acer truncatum HOM05D001734 ORTHO05D023218 3.4e-07 62.8 53 58.5
DCAR_022420 Daucus carota HOM05D001734 ORTHO05D006943 1.7e-06 60.5 51 62.7
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 2.9e-06 59.7 304 23.7


User provided reference genes

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