Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.3e-209 730.7 351 100.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.8e-207 724.5 351 98.9
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 3.2e-206 721.5 351 98.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.3e-199 699.5 351 95.7
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.3e-195 684.5 357 92.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 5.7e-187 657.5 352 88.9
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 1.6e-181 639.4 352 86.9
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.3e-177 624.4 352 83.0
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 7.2e-174 614.0 352 83.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.6e-173 612.8 352 81.5
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 6.1e-173 610.9 352 80.4
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 3.0e-172 608.6 352 81.0
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 6.7e-172 607.4 352 79.8
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.5e-171 606.3 353 80.7
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.2e-170 602.4 352 79.3
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 3.7e-170 601.7 351 80.3
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 4.8e-170 601.3 353 79.9
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 6.3e-170 600.9 350 78.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 8.2e-170 600.5 353 79.6
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 8.2e-170 600.5 352 79.5
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 8.2e-170 600.5 352 79.8
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.1e-169 600.1 352 79.3
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.1e-169 598.6 350 78.3
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 3.1e-169 598.6 352 77.3
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.6e-168 595.5 352 79.8
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 2.6e-168 595.5 352 79.5
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 7.7e-168 594.0 352 79.8
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 7.7e-168 594.0 352 78.1
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.0e-167 593.6 353 79.3
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 5.0e-167 591.3 352 78.7
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.4e-166 589.7 353 78.2
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.9e-166 589.3 350 76.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.9e-166 589.3 350 77.7
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 7.2e-166 587.4 361 77.6
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.2e-165 586.6 350 76.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.2e-165 586.6 352 77.0
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.6e-165 586.3 351 79.2
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.6e-165 586.3 339 80.2
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 2.1e-165 585.9 350 76.9
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 2.1e-165 585.9 350 76.9
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.1e-165 585.9 352 78.1
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.7e-165 584.7 351 76.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.0e-164 583.6 353 77.6
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 3.0e-164 582.0 350 76.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 5.2e-164 581.3 339 79.1
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 6.7e-164 580.9 352 75.9
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 75.6
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.5e-163 579.7 350 76.0
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 9.7e-163 577.0 354 77.1
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 6.3e-162 574.3 350 73.7
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-161 572.8 339 78.8
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.4e-161 572.4 355 74.9
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 5.3e-161 571.2 338 78.7
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 5.9e-160 567.8 352 73.6
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.0e-159 567.0 352 73.6
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 2.9e-159 565.5 352 75.3
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.5e-158 563.1 351 73.8
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.2e-158 562.0 352 73.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 7.2e-158 560.8 338 77.2
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 9.4e-158 560.5 352 74.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 73.3
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 6.1e-157 557.8 352 74.7
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 6.1e-157 557.8 351 76.1
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 73.3
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.8e-156 556.2 352 73.9
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.8e-156 556.2 352 73.9
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 5.2e-156 554.7 352 73.3
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 5.2e-156 554.7 353 72.8
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 6.7e-156 554.3 374 71.7
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.6e-155 552.4 352 73.9
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 2.6e-155 552.4 340 75.3
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 5.7e-155 551.2 319 79.0
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 6.3e-154 547.7 352 73.0
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.8e-153 546.2 352 72.7
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.8e-153 546.2 352 72.7
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 7.0e-153 544.3 352 72.7
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-152 543.5 319 79.3
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.0e-152 542.7 352 71.9
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 5.9e-152 541.2 347 71.5
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 2.5e-150 535.8 319 78.7
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.2e-150 535.0 352 72.2
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 4.2e-150 535.0 352 71.9
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 4.2e-150 535.0 350 72.0
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 5.5e-150 534.6 352 71.9
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.6e-149 533.1 339 72.6
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 8.0e-149 530.8 352 71.6
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 8.8e-148 527.3 383 67.4
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 2.0e-147 526.2 352 67.9
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 5.7e-147 524.6 352 70.5
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.4e-145 520.0 338 73.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.0e-143 511.5 352 70.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 6.6e-143 511.1 417 59.7
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 7.2e-142 507.7 295 79.3
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.8e-138 495.7 294 77.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 3.7e-138 495.4 338 65.4
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 4.9e-138 495.0 309 74.1
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 4.9e-138 495.0 309 74.1
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.8e-136 487.6 342 68.1
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 1.0e-135 487.3 353 63.7
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.3e-135 486.9 319 70.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.6e-133 479.9 353 62.9
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.6e-131 472.6 269 79.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.4e-131 472.2 319 70.5
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 2.2e-130 469.5 309 71.8
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.6e-128 463.4 353 60.9
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-128 462.6 303 71.9
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.2e-123 447.2 397 58.2
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 3.4e-123 445.7 323 66.6
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 3.2e-121 439.1 255 79.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.4e-116 423.7 263 76.0
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.6e-115 419.5 352 60.8
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 2.4e-108 396.4 223 84.3
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.1e-92 342.8 201 79.1
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.7e-87 325.1 203 74.4
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.1e-84 317.8 180 82.2
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 9.0e-84 314.7 356 41.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.2e-82 310.1 232 62.1
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 8.4e-82 308.1 358 41.9
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.3e-78 295.8 211 67.3
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 3.4e-75 286.2 354 40.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.9e-70 270.4 158 77.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.2e-67 261.2 198 62.6
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-52 211.5 126 80.2
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.1e-52 209.5 144 68.8
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.1e-52 209.5 363 31.1
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 6.7e-47 192.2 126 72.2
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.4e-44 183.7 108 75.9
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.7e-43 178.7 129 65.1
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 7.2e-41 172.2 87 90.8
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 5.2e-39 166.0 224 41.5
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 6.8e-31 139.0 339 27.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.9e-25 120.9 72 69.4
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 4.2e-25 119.8 76 72.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.8e-24 117.1 82 58.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.5e-22 111.3 217 30.0
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.2e-20 103.6 69 72.5
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.6e-19 101.3 70 70.0
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 5.6e-17 92.8 355 23.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.2e-15 86.3 63 63.5
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-14 82.4 54 75.9
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.9e-13 80.5 44 79.5
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 3.7e-13 80.1 220 25.5
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 4.1e-12 76.6 55 58.2
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 2.0e-11 74.3 166 25.3
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.3e-10 71.6 135 34.1
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 1.7e-10 71.2 256 24.6
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 3.0e-10 70.5 144 27.1
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 3.0e-10 70.5 167 34.1
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.1e-09 68.6 171 25.7
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.9e-09 67.8 71 38.0
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.9e-09 67.8 148 27.0
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.5e-09 67.4 149 26.2
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.3e-09 67.0 149 26.2
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 3.3e-09 67.0 146 27.4
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 5.6e-09 66.2 157 25.5
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 7.3e-09 65.9 221 23.1
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.6e-08 64.7 148 28.4
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 3.6e-08 63.5 149 24.2
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.6e-08 63.5 149 24.2
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 3.6e-08 63.5 178 25.3
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 3.6e-08 63.5 178 24.7
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.1e-08 62.4 149 23.5
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.1e-08 62.4 149 23.5
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.1e-07 62.0 218 23.9
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.3e-07 60.8 221 25.3
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.3e-07 60.8 33 78.8
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.3e-07 60.8 48 54.2
Cfa025337 Carpinus fangiana HOM05D001978 ORTHO05D003036 5.2e-07 59.7 304 23.0
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 6.8e-07 59.3 151 25.2
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 6.8e-07 59.3 46 56.5
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.9e-07 58.9 148 24.3
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 1.5e-06 58.2 113 31.9
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 2.6e-06 57.4 212 24.1
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.4e-06 57.0 85 38.8
Solyc02g078000.2 Solanum lycopersicum HOM05D000836 ORTHO05D000709 3.4e-06 57.0 93 31.2
BolC5t30100H Brassica oleracea HOM05D003006 ORTHO05D003438 4.4e-06 56.6 113 31.0
Gohir.A01G002500 Gossypium hirsutum HOM05D000347 ORTHO05D001997 4.4e-06 56.6 154 25.3
Gorai.002G002900 Gossypium raimondii HOM05D000347 ORTHO05D001997 4.4e-06 56.6 154 25.3
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 4.4e-06 56.6 180 28.3
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 5.8e-06 56.2 42 59.5
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 9.8e-06 55.5 213 22.5
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 9.8e-06 55.5 41 58.5


User provided reference genes

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