Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 0.0e+00 1127.5 575 100.0
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 5.5e-240 834.3 598 75.6
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.0e-238 830.1 700 67.3
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.8e-236 821.2 602 75.1
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 2.1e-231 805.8 572 76.7
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.4e-227 791.2 602 73.1
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.4e-221 771.5 436 92.0
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.2e-186 657.1 599 61.8
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 6.6e-185 651.4 609 60.4
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.1e-182 642.5 603 58.5
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 8.4e-180 634.4 598 58.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.9e-179 633.3 598 57.7
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.3e-176 622.5 605 57.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.6e-175 620.2 595 57.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.6e-170 603.6 617 55.1
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 8.2e-167 591.3 607 55.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 9.0e-166 587.8 604 54.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 8.4e-164 581.3 602 55.0
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.5e-163 579.7 597 53.8
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.3e-161 573.9 601 54.7
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 8.7e-161 571.2 601 54.6
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.1e-160 570.9 632 53.2
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 2.5e-160 569.7 597 52.6
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 9.7e-160 567.8 595 52.4
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.8e-159 566.2 599 52.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.8e-159 566.2 598 51.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 8.2e-159 564.7 597 53.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.1e-158 564.3 601 52.4
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.4e-158 563.9 599 52.9
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 4.1e-158 562.4 605 52.4
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.9e-156 556.2 607 52.9
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-155 553.5 457 70.0
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.5e-155 553.1 628 50.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 7.9e-154 548.1 599 50.9
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.0e-153 547.7 608 51.6
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.5e-152 543.1 582 53.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.7e-151 540.4 597 50.9
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.7e-151 540.4 614 51.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.8e-151 539.7 610 50.5
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.7e-151 539.3 601 51.7
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 4.1e-150 535.8 607 51.7
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 5.3e-150 535.4 601 51.4
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 5.3e-150 535.4 595 51.1
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 9.1e-150 534.6 601 50.1
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.0e-149 533.5 600 50.8
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.6e-149 533.1 603 51.9
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.7e-148 530.4 570 51.8
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 3.8e-148 529.3 601 49.6
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.4e-147 527.3 603 50.6
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.9e-147 526.9 601 50.7
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 3.2e-147 526.2 601 51.1
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.1e-146 523.5 605 50.7
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 3.6e-146 522.7 603 49.9
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 6.1e-146 521.9 590 51.5
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 7.9e-146 521.5 590 51.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.9e-146 521.5 600 50.7
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 2.3e-145 520.0 590 51.4
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 2.3e-145 520.0 590 51.4
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 3.0e-145 519.6 599 48.7
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.9e-145 519.2 594 50.7
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-144 516.2 590 51.0
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 9.7e-144 514.6 590 50.8
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 4.8e-143 512.3 557 52.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.4e-142 510.8 601 49.6
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.8e-142 510.4 531 54.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.5e-141 506.1 597 49.6
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 3.5e-141 506.1 604 48.3
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.7e-141 505.0 602 49.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 7.2e-139 498.4 572 50.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 2.7e-138 496.5 606 47.7
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.7e-138 495.7 602 47.2
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.0e-137 493.0 399 70.9
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.0e-137 492.7 591 49.7
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 4.0e-137 492.7 604 47.0
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 8.8e-137 491.5 602 47.0
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 8.8e-137 491.5 610 47.5
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.8e-137 491.5 724 44.2
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.8e-137 491.5 724 44.2
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.3e-136 489.6 597 47.9
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 3.3e-136 489.6 610 47.4
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 5.7e-136 488.8 602 47.3
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 5.7e-136 488.8 663 45.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 7.5e-136 488.4 607 46.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 2.2e-135 486.9 602 46.5
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.8e-134 483.8 612 48.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.8e-134 483.8 517 53.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.6e-133 480.7 595 48.7
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.0e-133 480.3 603 46.6
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.5e-133 479.2 612 48.0
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.2e-132 476.9 607 46.6
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 3.2e-131 473.0 609 46.1
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.6e-130 470.7 520 51.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.0e-129 468.0 616 47.1
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 2.0e-128 463.8 513 52.4
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.5e-128 461.8 579 47.2
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-126 456.4 609 46.6
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 4.5e-125 452.6 590 47.1
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.0e-124 451.4 618 46.0
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 7.2e-123 445.3 506 52.2
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 8.0e-122 441.8 587 47.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.8e-121 440.7 599 46.6
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 5.2e-121 439.1 590 46.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.3e-119 434.5 700 41.1
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.2e-118 428.3 389 58.6
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.4e-113 414.5 507 51.1
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.8e-113 414.1 443 52.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 5.2e-113 412.5 601 43.4
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 8.9e-113 411.8 442 53.4
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.6e-112 410.2 595 43.5
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.3e-108 397.1 489 49.3
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.6e-108 395.2 340 67.9
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.6e-108 395.2 400 56.0
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.2e-106 391.3 512 46.3
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 6.8e-105 385.6 406 53.7
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 8.9e-105 385.2 603 41.1
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.2e-104 384.8 450 49.8
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.9e-102 377.5 227 89.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 4.6e-101 372.9 653 40.4
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 6.6e-100 369.0 226 82.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.4e-97 361.3 400 50.8
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.8e-97 360.9 360 55.3
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-95 352.1 340 63.5
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 3.2e-94 350.1 520 43.5
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.7e-93 347.1 612 37.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.8e-90 337.0 611 35.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.0e-89 333.2 423 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.1e-85 320.9 606 36.1
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.9e-80 302.0 316 53.5
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.7e-77 293.9 490 41.6
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.8e-74 283.9 504 40.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.1e-73 282.0 330 50.9
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 9.9e-72 275.4 423 44.7
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.3e-63 248.4 587 33.2
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 4.3e-59 233.4 270 48.5
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 2.1e-53 214.5 242 49.6
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.7e-53 214.2 285 46.7
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 8.7e-52 209.1 241 48.5
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-50 204.5 246 44.7
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.5e-46 191.0 307 42.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.8e-44 184.9 285 42.5
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.5e-43 181.8 166 57.2
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.5e-43 181.8 166 57.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 4.3e-43 180.3 299 40.5
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 7.7e-40 169.5 120 70.8
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.6e-37 160.6 223 45.7
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.1e-35 155.6 172 57.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.5e-35 155.2 342 34.5
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.4e-33 148.7 186 50.5
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.4e-33 148.7 218 41.3
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 5.9e-32 143.3 186 47.3
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 9.4e-30 136.0 186 45.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-25 122.5 155 45.8
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 3.3e-19 100.9 80 58.8
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 7.5e-19 99.8 177 38.4
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.8e-18 97.8 190 37.4
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 8.2e-18 96.3 69 65.2
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 1.8e-17 95.1 76 60.5
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.1e-17 94.4 173 38.2
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.2e-16 92.4 77 57.1
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 1.6e-16 92.0 123 44.7
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.6e-16 92.0 57 71.9
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.5e-16 90.9 57 75.4
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 7.7e-16 89.7 80 53.8
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.1e-14 85.9 196 33.2
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 2.1e-13 81.6 152 36.8
FAN05G5087 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.1e-13 80.1 46 84.8
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 6.8e-12 76.6 100 48.0
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.4e-11 74.3 288 23.3
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 7.5e-11 73.2 56 58.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.3e-10 72.4 53 62.3
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.1e-09 69.3 133 32.3
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.7e-07 62.0 139 30.2
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 2.9e-07 61.2 146 30.8
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 2.9e-07 61.2 95 41.1
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 5.0e-07 60.5 56 44.6
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 1.9e-06 58.5 57 52.6
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 2.5e-06 58.2 207 28.0
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 5.5e-06 57.0 100 39.0


User provided reference genes

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