Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 2009.6 1032 100.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 2008.0 1032 99.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1966.4 1034 98.1
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1946.4 1076 94.1
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1924.8 1075 93.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1839.3 1038 91.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1659.8 1044 82.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1649.4 1041 82.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1629.0 1060 80.7
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1604.3 1055 79.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1584.3 1048 79.0
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1048 78.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1564.3 1054 78.7
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1560.0 1054 78.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1051 77.5
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1050 77.6
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1053 78.2
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1045 77.8
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1549.6 1045 77.7
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1054 77.3
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1049 76.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1544.6 1052 77.3
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1043 77.4
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1058 76.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1539.2 1051 77.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1024 78.2
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1081 74.8
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1045 76.7
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1047 76.8
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1066 76.1
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1058 75.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1050 75.8
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1531.2 1066 76.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1063 75.4
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1050 75.9
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1058 76.7
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1526.9 1041 76.3
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1525.4 1055 76.6
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1051 76.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1048 75.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1524.6 1050 76.4
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1044 76.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1521.9 1023 78.1
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1048 75.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1044 76.2
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1514.6 1058 75.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1513.0 1045 74.6
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1511.1 1062 75.3
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1024 77.1
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1040 75.9
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1507.3 1061 75.2
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1506.1 1049 74.6
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1503.0 1045 75.0
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1051 75.0
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1052 75.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1056 74.4
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1085 73.0
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1047 75.2
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1496.9 1048 75.1
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1496.5 1051 74.1
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1054 74.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1493.0 1052 73.7
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1052 73.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1489.2 1052 73.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1488.4 1053 73.6
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1488.4 1053 73.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1051 73.6
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1486.9 1053 74.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1485.7 1052 74.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1485.3 1050 73.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1484.2 1050 74.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1483.4 1057 74.4
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1480.3 1039 74.0
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1479.5 1041 74.7
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1478.8 1075 73.5
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1478.0 1050 73.5
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1476.8 1038 74.1
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1473.0 1055 73.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1471.8 1049 72.7
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1471.1 1053 73.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1467.6 1042 74.3
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1467.2 1050 72.8
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1467.2 1056 73.3
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1465.7 1037 74.0
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1465.3 1052 73.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1459.9 1043 73.7
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1058 72.2
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1456.4 1058 72.1
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1455.7 1029 73.3
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1454.5 1036 74.1
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1452.2 1056 73.3
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1446.0 1056 72.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1436.0 1060 71.8
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1424.5 1024 72.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1418.3 1042 70.8
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1412.9 1044 70.1
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1404.0 1021 71.8
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1401.7 1155 66.1
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1399.8 1008 73.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1392.9 1019 70.5
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1374.0 1058 70.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1353.6 1023 69.4
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1334.3 1052 69.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1322.0 1046 68.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1307.4 926 73.1
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1276.9 956 68.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1250.3 1048 65.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1249.2 1024 66.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1228.4 958 66.7
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1221.5 1032 64.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1220.7 1028 62.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1153.7 818 73.0
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1082.0 1005 59.8
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1077.8 1026 56.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 1.4e-310 1069.7 1018 57.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 4.0e-297 1025.0 757 72.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 4.9e-295 1018.1 1019 53.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 2.6e-288 995.7 1028 52.9
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.7e-288 994.6 957 58.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.4e-278 963.4 711 69.5
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.7e-277 959.1 611 83.0
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.5e-277 958.7 711 69.3
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.9e-263 912.5 1028 51.4
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 8.4e-255 884.4 1021 50.6
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-254 884.0 1030 50.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 2.7e-253 879.4 624 72.8
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 3.8e-231 805.8 484 85.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.2e-230 802.4 556 75.4
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.4e-212 744.2 451 85.1
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-198 697.2 1032 44.1
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.7e-194 684.1 442 79.2
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.8e-180 635.6 1012 41.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 6.3e-178 629.0 383 83.0
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.5e-176 622.9 486 68.9
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 8.6e-167 592.0 495 60.2
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 9.5e-166 588.6 404 74.5
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.4e-162 575.9 1070 35.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 8.9e-156 555.4 454 63.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 4.9e-154 549.7 554 56.1
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-144 516.9 375 71.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 369 71.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 369 71.8
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.2e-140 503.1 416 62.5
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-138 498.4 377 71.4
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.5e-134 485.0 322 75.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 5.8e-131 473.0 503 55.9
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.9e-128 462.6 655 42.7
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-120 438.3 594 45.6
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.8e-119 434.9 1083 31.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.5e-110 404.4 286 72.7
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 5.1e-95 353.6 294 63.3
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-86 325.1 508 42.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 6.5e-82 310.1 199 78.9
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 3.0e-79 301.2 522 35.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.1e-76 290.8 283 56.5
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.0e-74 286.2 397 44.6
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-70 271.6 232 65.1
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-67 262.3 429 43.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-66 259.6 291 50.2
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-63 249.2 223 64.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.2e-59 236.1 184 69.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.8e-54 216.5 140 78.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.6e-48 199.1 125 80.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.9e-45 188.3 172 62.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 4.1e-44 184.5 197 48.2
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-41 174.5 128 69.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 4.3e-41 174.5 156 60.9
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.0e-38 165.6 138 61.6
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.5e-33 149.4 253 40.7
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-33 148.7 172 52.9
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.4e-31 142.1 206 40.8
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.9e-25 122.5 260 35.8
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.8e-24 118.6 84 66.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.1e-19 102.4 96 60.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.8e-14 84.3 55 74.5
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.3e-13 83.2 67 59.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.9e-12 79.3 72 50.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.3e-09 68.6 115 35.7


User provided reference genes

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