Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3422 Fragaria x ananassa HOM05D003188 ORTHO05D003602 5.0e-30 133.7 62 100.0
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 1.6e-28 128.6 60 98.3
FAN11G0282 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.0e-27 124.4 62 91.9
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 4.4e-26 120.6 60 91.7
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.0e-15 83.6 41 90.2
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 1.1e-13 79.3 39 89.7
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.1e-13 79.3 39 89.7
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 1.1e-13 79.3 39 89.7
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 2.5e-13 78.2 39 87.2
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 2.5e-13 78.2 39 87.2
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 2.5e-13 78.2 39 87.2
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 3.3e-13 77.8 39 84.6
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 5.6e-13 77.0 39 84.6
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 7.3e-13 76.6 39 84.6
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 9.5e-13 76.3 39 84.6
CSS0039000 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 1.2e-12 75.9 39 82.1
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.2e-12 75.9 39 84.6
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.2e-12 75.9 39 79.5
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 1.6e-12 75.5 39 82.1
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 2.1e-12 75.1 39 79.5
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 2.8e-12 74.7 39 79.5
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 2.8e-12 74.7 39 79.5
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 2.8e-12 74.7 39 79.5
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 2.8e-12 74.7 39 79.5
QL10p058686 Quercus lobata HOM05D003188 ORTHO05D003602 2.8e-12 74.7 39 79.5
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 3.6e-12 74.3 36 91.7
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.6e-12 74.3 39 76.9
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.6e-12 74.3 39 79.5
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.6e-12 74.3 39 79.5
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 3.6e-12 74.3 39 79.5
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 3.6e-12 74.3 39 82.1
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 4.7e-12 73.9 39 74.4
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 82.1
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 82.1
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 79.5
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 79.5
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 82.1
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 82.1
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 82.1
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 79.5
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 6.2e-12 73.6 39 76.9
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 79.5
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 71.8
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 71.8
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 74.4
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 79.5
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 8.1e-12 73.2 39 74.4
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 1.1e-11 72.8 39 74.4
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.1e-11 72.8 39 76.9
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.1e-11 72.8 55 60.0
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.1e-11 72.8 55 60.0
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 1.4e-11 72.4 55 60.0
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 1.4e-11 72.4 55 60.0
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 1.4e-11 72.4 39 76.9
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 1.4e-11 72.4 39 71.8
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 1.4e-11 72.4 39 79.5
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 1.8e-11 72.0 55 58.2
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 1.8e-11 72.0 39 74.4
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 2.3e-11 71.6 37 81.1
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 2.3e-11 71.6 55 54.5
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 3.1e-11 71.2 41 68.3
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 3.1e-11 71.2 39 74.4
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 3.1e-11 71.2 39 74.4
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 3.1e-11 71.2 39 74.4
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.1e-11 71.2 39 74.4
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 4.0e-11 70.9 39 71.8
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 4.0e-11 70.9 39 74.4
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 4.0e-11 70.9 39 76.9
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 5.2e-11 70.5 41 65.9
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 5.2e-11 70.5 55 58.2
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 5.2e-11 70.5 39 76.9
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 5.2e-11 70.5 39 76.9
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 5.2e-11 70.5 39 79.5
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 5.2e-11 70.5 39 69.2
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 6.8e-11 70.1 39 74.4
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 6.8e-11 70.1 54 59.3
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 6.8e-11 70.1 39 69.2
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 8.9e-11 69.7 39 69.2
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 1.2e-10 69.3 55 58.2
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 1.2e-10 69.3 39 66.7
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.2e-10 69.3 39 71.8
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.2e-10 69.3 39 71.8
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 1.2e-10 69.3 39 74.4
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.5e-10 68.9 55 54.5
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.5e-10 68.9 55 54.5
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.5e-10 68.9 55 54.5
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.5e-10 68.9 39 69.2
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.5e-10 68.9 39 69.2
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 1.5e-10 68.9 60 60.0
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 1.5e-10 68.9 39 71.8
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 2.0e-10 68.6 57 56.1
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.0e-10 68.6 39 69.2
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 2.0e-10 68.6 40 80.0
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 2.0e-10 68.6 39 74.4
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 2.0e-10 68.6 55 56.4
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 2.0e-10 68.6 39 69.2
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 2.6e-10 68.2 55 58.2
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 2.6e-10 68.2 55 56.4
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.6e-10 68.2 55 56.4
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.6e-10 68.2 39 69.2
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 3.4e-10 67.8 39 66.7
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 3.4e-10 67.8 55 54.5
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 3.4e-10 67.8 39 69.2
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 4.4e-10 67.4 55 58.2
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 4.4e-10 67.4 39 69.2
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 4.4e-10 67.4 39 69.2
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 5.8e-10 67.0 55 58.2
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 5.8e-10 67.0 55 52.7
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 7.5e-10 66.6 55 52.7
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 9.8e-10 66.2 55 58.2
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 9.8e-10 66.2 39 71.8
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 9.8e-10 66.2 39 71.8
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.3e-09 65.9 39 66.7
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.3e-09 65.9 39 66.7
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 2.2e-09 65.1 55 49.1
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.2e-09 65.1 55 49.1
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 2.2e-09 65.1 41 63.4
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 2.2e-09 65.1 55 49.1
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.9e-09 64.7 39 71.8
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.9e-09 64.7 39 71.8
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 2.9e-09 64.7 55 49.1
FAN04G1160 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.9e-09 63.9 39 71.8
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 6.4e-09 63.5 44 56.8
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 6.4e-09 63.5 55 54.5
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 6.4e-09 63.5 39 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 8.3e-09 63.2 41 61.0
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 8.3e-09 63.2 39 69.2
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 8.3e-09 63.2 39 69.2
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 8.3e-09 63.2 39 69.2
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.4e-08 62.4 41 58.5
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.4e-08 61.6 38 68.4
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 3.2e-08 61.2 39 64.1
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 3.2e-08 61.2 39 59.0
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 4.1e-08 60.8 34 79.4
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 4.1e-08 60.8 55 47.3
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 5.4e-08 60.5 41 65.9
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 7.1e-08 60.1 44 63.6
unitig_699.g19608 Utricularia gibba HOM05D003188 ORTHO05D003602 7.1e-08 60.1 44 50.0
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 9.2e-08 59.7 38 63.2
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 1.6e-07 58.9 40 60.0
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 2.7e-07 58.2 55 49.1
FAN08G0088 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.7e-07 58.2 27 88.9
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 6.0e-07 57.0 39 61.5
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 1.0e-06 56.2 54 46.3
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-06 56.2 54 46.3
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 1.0e-06 56.2 54 46.3
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.7e-06 55.5 38 57.9
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 3.9e-06 54.3 54 44.4
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 3.9e-06 54.3 54 44.4
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 5.1e-06 53.9 39 64.1


User provided reference genes

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