Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1409.4 743 100.0
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 0.0e+00 1206.0 650 98.8
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1185.2 650 96.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1185.2 650 96.6
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1114.4 650 92.2
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 0.0e+00 1097.4 650 89.8
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 6.3e-236 821.2 652 70.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.8e-220 769.2 648 67.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 8.0e-207 724.5 662 61.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.4e-206 723.8 664 62.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 8.8e-206 721.1 663 62.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 3.4e-205 719.2 668 60.0
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.4e-205 718.8 668 62.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 5.7e-205 718.4 660 62.7
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 9.8e-205 717.6 667 61.8
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.3e-204 717.2 662 62.8
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 2.4e-203 713.0 664 62.3
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.7e-202 709.5 665 62.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.7e-202 709.5 661 61.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 5.0e-201 705.3 663 61.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-200 704.1 664 61.1
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.9e-200 703.4 661 62.5
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.5e-200 701.8 667 60.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.2e-200 701.4 666 60.7
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.6e-199 700.3 664 60.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.8e-199 699.5 667 60.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.7e-199 698.7 667 60.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 6.1e-199 698.4 663 62.0
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 8.0e-199 698.0 665 59.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.4e-198 697.2 665 60.6
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.0e-198 696.0 666 61.0
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.2e-198 695.3 667 60.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 6.8e-198 694.9 667 60.4
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.0e-197 693.3 667 60.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.7e-196 690.3 664 60.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 6.3e-196 688.3 664 59.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 5.4e-195 685.3 664 60.7
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.2e-194 684.1 671 58.7
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-194 682.9 667 59.7
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.7e-194 682.9 664 60.4
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 3.8e-193 679.1 660 59.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.0e-193 678.7 668 59.0
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.6e-193 678.3 669 59.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 6.6e-193 678.3 664 60.5
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 3.3e-192 676.0 667 59.4
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.3e-192 676.0 666 58.1
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.2e-191 674.1 665 57.7
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 4.7e-191 672.2 666 58.3
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.3e-190 669.8 640 60.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 5.7e-189 665.2 668 59.6
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.3e-188 664.1 666 58.9
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 6.4e-188 661.8 677 57.8
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-187 661.0 664 59.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-187 661.0 664 59.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-186 657.5 663 59.0
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 2.0e-186 656.8 659 58.0
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.1e-184 651.0 660 57.7
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.1e-184 651.0 665 58.0
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.3e-182 643.3 666 58.4
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.1e-182 642.9 658 57.6
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.5e-181 638.3 660 57.0
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.9e-180 635.6 662 57.6
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.9e-180 635.6 668 56.9
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.4e-179 634.0 662 56.2
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.0e-178 630.2 658 57.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.7e-177 627.1 667 56.8
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.0e-177 626.3 656 57.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.9e-177 625.9 658 56.5
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.5e-176 623.2 660 56.7
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.6e-175 620.5 659 56.9
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.3e-174 616.7 659 56.6
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.3e-174 616.7 659 56.6
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.1e-174 616.3 656 56.6
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 8.9e-174 614.8 681 56.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.2e-173 614.4 667 56.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 5.8e-173 612.1 656 57.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.8e-173 611.3 661 55.1
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.7e-172 610.5 660 55.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 8.3e-172 608.2 676 55.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.9e-171 607.1 671 54.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.9e-171 607.1 663 56.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 5.4e-171 605.5 661 55.2
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 7.1e-171 605.1 676 55.5
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.2e-170 604.4 664 53.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-170 604.0 655 53.3
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 7.8e-170 601.7 661 54.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.3e-169 600.9 659 55.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.0e-169 599.7 661 54.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.1e-168 597.8 657 53.6
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-168 597.4 616 57.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.3e-168 596.3 675 55.3
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.3e-168 596.3 668 54.9
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.8e-167 593.2 656 54.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 6.2e-167 592.0 665 55.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 6.2e-167 592.0 668 54.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.1e-166 591.3 661 53.9
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.3e-166 590.1 679 53.9
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.3e-166 590.1 655 53.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 4.0e-166 589.3 666 55.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.9e-166 588.2 669 53.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.6e-165 585.1 663 54.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 7.6e-165 585.1 657 54.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.9e-164 583.2 666 53.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 6.4e-164 582.0 661 53.3
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-163 581.3 669 51.9
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.9e-163 580.5 661 53.7
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.4e-163 580.1 661 53.6
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 4.1e-163 579.3 658 54.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-162 577.4 662 54.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.1e-162 577.0 660 53.3
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.1e-162 577.0 667 52.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.6e-162 575.9 672 52.1
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.3e-161 573.5 670 53.4
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.9e-161 572.8 656 53.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.1e-160 571.2 662 53.6
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.5e-160 570.1 669 52.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-159 566.6 664 54.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.6e-159 566.2 552 58.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.6e-159 566.2 552 58.7
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.6e-159 566.2 671 51.0
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.7e-159 565.8 544 59.6
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 5.2e-158 562.4 678 51.3
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.4e-157 559.7 657 52.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 3.4e-157 559.7 661 51.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.4e-155 554.3 658 52.6
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.1e-155 552.0 675 50.7
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.1e-155 552.0 685 51.7
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.2e-154 551.2 653 52.5
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.6e-153 545.4 685 49.6
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.5e-152 543.5 662 51.5
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 4.8e-151 539.3 688 49.6
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 8.1e-151 538.5 658 50.0
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.4e-150 537.0 664 51.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.2e-149 534.6 679 50.8
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.4e-147 527.7 684 49.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.7e-145 518.8 662 49.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-143 514.2 660 48.6
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.8e-143 513.5 683 49.5
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.0e-142 508.4 648 49.1
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.4e-139 501.1 656 49.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.3e-137 494.6 666 46.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 5.6e-136 489.2 661 47.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.2e-135 485.7 652 50.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 6.2e-135 485.7 665 46.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.0e-129 468.4 661 45.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.7e-127 459.9 614 47.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.4e-123 448.0 542 49.6
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.7e-116 424.5 614 46.1
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.9e-116 423.7 607 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.8e-113 414.5 660 43.5
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 3.1e-102 377.1 421 55.1
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.5e-101 373.2 401 55.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.6e-98 363.6 401 53.4
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.4e-97 361.7 405 55.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-97 361.3 656 41.8
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.8e-92 343.6 668 40.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 9.8e-80 302.4 560 40.2
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.3e-76 292.0 542 39.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.3e-75 287.0 236 67.8
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.1e-66 258.1 312 49.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 7.8e-61 239.6 641 33.2
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.6e-59 233.4 437 38.2
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.3e-57 228.0 654 33.5
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.7e-47 195.3 272 40.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.0e-28 131.3 119 54.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.8e-26 124.8 77 77.9
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-26 124.8 229 45.4
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 8.1e-26 123.2 160 51.2
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.2e-22 110.9 109 48.6
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 5.1e-20 104.0 391 25.6
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.7e-20 103.2 78 71.8
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.9e-19 102.1 126 55.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.5e-19 101.7 79 63.3
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 8.4e-15 86.7 468 22.9
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.2e-14 84.7 74 56.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.3e-12 78.6 74 48.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 4.3e-11 74.3 46 71.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.5e-06 58.5 318 27.4


User provided reference genes

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