Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.7e-180 634.8 331 100.0
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.8e-179 632.5 331 99.7
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 4.7e-175 617.8 331 97.3
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.0e-174 616.7 331 97.0
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.2e-159 564.3 340 88.8
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 4.7e-143 511.5 334 79.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 2.0e-117 426.4 311 72.0
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.3e-108 397.1 340 62.9
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 3.8e-108 395.6 346 62.4
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 5.1e-105 385.2 342 60.8
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 6.7e-105 384.8 340 61.2
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 6.7e-105 384.8 350 60.3
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.5e-104 383.6 355 59.4
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.5e-104 382.9 339 61.4
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 4.3e-104 382.1 337 62.6
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 4.3e-104 382.1 344 60.5
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 5.7e-104 381.7 340 60.9
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 7.4e-104 381.3 361 58.2
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 1.6e-103 380.2 348 61.8
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.8e-102 376.7 350 60.6
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 5.3e-102 375.2 342 60.8
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 6.9e-102 374.8 333 61.6
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 6.9e-102 374.8 329 61.4
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.2e-101 374.0 348 60.6
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 8.4e-100 367.9 345 59.7
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 9.3e-99 364.4 348 58.9
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 6.7e-97 358.2 347 58.2
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.1e-96 357.5 348 57.2
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 4.3e-96 355.5 332 56.9
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 1.4e-94 350.5 339 56.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.4e-94 350.5 333 57.4
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 3.1e-94 349.4 337 56.1
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 1.2e-93 347.4 338 56.2
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.5e-93 347.1 304 60.9
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 2.6e-93 346.3 332 56.0
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 7.7e-93 344.7 337 54.3
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 7.7e-93 344.7 326 59.2
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 7.7e-93 344.7 328 57.9
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.0e-92 344.4 337 55.5
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.3e-92 344.0 337 55.5
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.2e-92 343.2 331 56.5
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 3.8e-92 342.4 337 54.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 6.5e-92 341.7 338 56.5
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.1e-91 340.9 337 54.9
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.1e-91 340.9 340 56.8
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.9e-91 340.1 337 55.5
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.2e-91 339.0 337 54.3
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 9.4e-91 337.8 345 55.4
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 2.1e-90 336.7 339 56.0
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.7e-90 336.3 343 54.2
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 6.1e-90 335.1 339 56.3
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.0e-89 334.3 348 54.9
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 6.7e-89 331.6 337 54.6
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 1.1e-88 330.9 344 53.2
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 1.5e-88 330.5 338 54.4
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.0e-88 330.1 339 53.7
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 4.3e-88 328.9 345 54.5
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 4.3e-88 328.9 343 53.9
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 5.7e-88 328.6 335 54.6
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 9.7e-88 327.8 339 54.3
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 3.1e-86 322.8 334 53.6
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 4.1e-86 322.4 344 53.5
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 6.9e-86 321.6 329 54.1
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.5e-85 320.5 338 54.4
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 2.6e-85 319.7 349 49.9
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 3.4e-85 319.3 344 52.0
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 3.4e-85 319.3 325 52.9
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.9e-83 313.5 321 53.9
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 5.5e-83 312.0 334 50.9
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 7.2e-83 311.6 333 52.3
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 3.6e-82 309.3 327 51.1
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 3.6e-82 309.3 332 52.7
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 5.1e-81 305.4 314 54.5
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 6.7e-81 305.1 382 47.9
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 6.7e-81 305.1 294 56.1
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 7.4e-80 301.6 331 49.8
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 4.8e-79 298.9 342 51.5
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.8e-78 297.0 292 52.4
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 6.5e-76 288.5 384 47.4
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 8.5e-76 288.1 323 50.5
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 9.4e-75 284.6 332 47.6
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 3.6e-74 282.7 340 50.0
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.5e-72 277.3 330 46.7
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.2e-69 267.7 319 46.1
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 2.7e-69 266.5 340 44.7
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.3e-68 264.2 336 47.9
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.2e-68 263.5 280 50.4
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 4.4e-56 222.6 324 40.7
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 5.7e-56 222.2 237 48.5
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 2.4e-54 216.9 264 50.0
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 5.9e-53 212.2 339 43.7
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 2.5e-51 206.8 202 52.0
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 2.5e-51 206.8 217 50.2
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 4.0e-49 199.5 277 43.7
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 1.7e-47 194.1 286 40.2
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 3.5e-37 159.8 139 60.4
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 2.6e-32 143.7 280 33.6
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 6.0e-29 132.5 96 62.5
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 6.6e-28 129.0 71 97.2
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 7.3e-27 125.6 144 55.6
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 7.6e-24 115.5 130 56.2
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 8.4e-23 112.1 291 29.6
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.1e-21 107.5 126 50.8
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-17 94.4 313 25.6
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 5.2e-17 92.8 119 42.9
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 6.6e-12 75.9 66 63.6
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.3e-11 73.6 98 40.8


User provided reference genes

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