Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-60 235.7 113 100.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-33 145.2 153 54.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.2e-33 144.4 153 54.2
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.2e-33 144.4 153 54.2
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.0e-32 142.5 153 53.6
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.6e-32 142.1 153 53.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.6e-32 142.1 153 53.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.3e-20 102.4 157 42.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.1e-17 92.0 152 40.8
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 7.0e-14 80.9 158 35.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.5e-13 78.6 159 36.5
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 4.6e-13 78.2 155 32.9
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 7.8e-13 77.4 158 35.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 7.8e-13 77.4 153 32.0
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.0e-12 77.0 157 34.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.3e-12 76.6 155 32.9
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.7e-12 76.3 156 35.3
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 6.6e-12 74.3 155 34.2
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 4.3e-11 71.6 158 33.5
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.6e-11 71.2 161 34.2
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.6e-11 71.2 159 34.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.5e-11 70.5 72 58.3
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.2e-10 70.1 158 33.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.6e-10 69.7 158 32.9
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.1e-10 69.3 72 52.8
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.8e-10 68.9 158 32.3
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.6e-10 68.6 161 35.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 3.6e-10 68.6 71 52.1
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.7e-10 68.2 72 54.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.7e-10 68.2 161 31.7
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 6.2e-10 67.8 156 32.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.2e-10 67.8 72 51.4
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 6.2e-10 67.8 72 52.8
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 6.2e-10 67.8 72 56.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 6.2e-10 67.8 72 55.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 8.1e-10 67.4 158 34.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 8.1e-10 67.4 156 33.3
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-09 67.0 156 33.3
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.4e-09 66.6 72 54.2
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.4e-09 66.6 72 55.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.3e-09 65.9 72 52.8
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.3e-09 65.9 159 33.3
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.3e-09 65.9 159 32.1
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 6.8e-09 64.3 161 31.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 8.9e-09 63.9 70 50.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.5e-08 63.2 74 51.4
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-08 63.2 30 96.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.0e-08 62.8 72 50.0
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.0e-08 62.8 72 48.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.6e-08 62.4 67 47.8
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.6e-08 62.4 73 50.7
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 7.5e-08 60.8 73 49.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.5e-08 60.8 30 93.3
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 7.5e-08 60.8 148 32.4
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 9.9e-08 60.5 74 48.6
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 9.9e-08 60.5 72 48.6
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-07 59.7 30 90.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.2e-07 59.3 67 44.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 2.2e-07 59.3 72 54.2
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 2.2e-07 59.3 72 51.4
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.9e-07 58.9 74 47.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.7e-07 58.5 71 47.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.9e-07 58.2 66 50.0
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 4.9e-07 58.2 75 46.7
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 4.9e-07 58.2 76 50.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 4.9e-07 58.2 69 49.3
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.3e-07 57.4 66 45.5
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 8.3e-07 57.4 75 46.7
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-06 57.0 71 47.9
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.4e-06 56.6 67 41.8
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.4e-06 56.6 71 43.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.9e-06 56.2 84 46.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.9e-06 56.2 70 42.9
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.4e-06 55.8 67 41.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.2e-06 55.5 74 44.6
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.2e-06 55.5 76 46.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 3.2e-06 55.5 156 29.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 4.1e-06 55.1 68 44.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.1e-06 54.3 84 41.7
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.1e-06 54.3 84 44.0
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 7.1e-06 54.3 155 29.7
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 9.2e-06 53.9 68 44.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 9.2e-06 53.9 69 46.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 9.2e-06 53.9 74 40.5


User provided reference genes

Program Settings