Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G3113 Fragaria x ananassa HOM05D003334 ORTHO05D022509 3.5e-45 184.5 88 100.0
FAN18G4190 Fragaria x ananassa HOM05D003334 ORTHO05D022509 7.8e-45 183.3 88 98.9
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.1e-43 179.5 88 97.7
FvH4_5g27321 Fragaria vesca HOM05D003334 ORTHO05D022509 8.7e-36 153.3 73 100.0
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 2.2e-15 85.5 48 75.0
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 1.4e-14 82.8 48 72.9
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 4.2e-14 81.3 55 65.5
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 1.6e-13 79.3 57 64.9
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.6e-13 78.2 49 71.4
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.6e-13 78.2 49 71.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 1.4e-12 76.3 44 72.7
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.4e-12 76.3 45 73.3
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.4e-12 76.3 49 69.4
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 2.3e-12 75.5 44 72.7
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 3.0e-12 75.1 56 58.9
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 2.0e-11 72.4 41 75.6
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.0e-11 72.4 56 66.1
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.5e-11 72.0 52 61.5
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.5e-11 72.0 41 73.2
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 2.5e-11 72.0 52 63.5
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 3.3e-11 71.6 56 64.3
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 3.3e-11 71.6 50 62.0
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 3.3e-11 71.6 50 62.0
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 3.3e-11 71.6 50 62.0
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 3.3e-11 71.6 51 60.8
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 3.3e-11 71.6 52 67.3
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 3.3e-11 71.6 41 73.2
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 4.3e-11 71.2 48 64.6
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 4.3e-11 71.2 45 64.4
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 4.3e-11 71.2 56 66.1
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 4.3e-11 71.2 56 57.1
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 4.3e-11 71.2 41 73.2
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 5.7e-11 70.9 56 60.7
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 5.7e-11 70.9 56 60.7
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 5.7e-11 70.9 45 66.7
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 5.7e-11 70.9 45 68.9
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 5.7e-11 70.9 49 67.3
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 5.7e-11 70.9 52 63.5
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 7.4e-11 70.5 41 70.7
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 7.4e-11 70.5 41 70.7
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 7.4e-11 70.5 41 70.7
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 7.4e-11 70.5 41 70.7
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 9.7e-11 70.1 41 70.7
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 9.7e-11 70.1 41 70.7
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 9.7e-11 70.1 51 64.7
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 9.7e-11 70.1 41 70.7
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 9.7e-11 70.1 50 64.0
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 9.7e-11 70.1 41 73.2
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 9.7e-11 70.1 51 60.8
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.3e-10 69.7 55 56.4
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 1.3e-10 69.7 45 64.4
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 1.3e-10 69.7 44 68.2
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.3e-10 69.7 56 57.1
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.3e-10 69.7 56 57.1
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 1.7e-10 69.3 41 70.7
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 1.7e-10 69.3 41 70.7
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 1.7e-10 69.3 56 60.7
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 1.7e-10 69.3 41 68.3
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 1.7e-10 69.3 43 69.8
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 2.2e-10 68.9 48 64.6
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 2.8e-10 68.6 53 60.4
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 2.8e-10 68.6 41 70.7
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 2.8e-10 68.6 41 70.7
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 2.8e-10 68.6 41 70.7
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 2.8e-10 68.6 41 70.7
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.8e-10 68.6 56 58.9
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 2.8e-10 68.6 56 62.5
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 2.8e-10 68.6 56 62.5
Hund21807 Selenicereus undatus HOM05D003334 ORTHO05D022509 2.8e-10 68.6 57 57.9
Hund21808 Selenicereus undatus HOM05D003334 ORTHO05D004076 2.8e-10 68.6 57 57.9
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 2.8e-10 68.6 52 63.5
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 3.7e-10 68.2 50 60.0
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 3.7e-10 68.2 47 63.8
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 3.7e-10 68.2 56 58.9
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 3.7e-10 68.2 41 68.3
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 3.7e-10 68.2 41 68.3
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 3.7e-10 68.2 50 56.0
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 4.8e-10 67.8 46 63.0
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 4.8e-10 67.8 53 52.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 4.8e-10 67.8 53 58.5
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 6.3e-10 67.4 54 50.0
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 6.3e-10 67.4 44 63.6
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 6.3e-10 67.4 53 58.5
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 6.3e-10 67.4 53 58.5
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 8.2e-10 67.0 44 63.6
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 8.2e-10 67.0 46 58.7
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 1.1e-09 66.6 55 60.0
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.1e-09 66.6 56 60.7
Dinv11744 Davidia involucrata HOM05D003334 ORTHO05D022509 1.4e-09 66.2 44 63.6
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.4e-09 66.2 42 64.3
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 1.4e-09 66.2 56 58.9
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 1.4e-09 66.2 37 73.0
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 1.8e-09 65.9 40 67.5
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.8e-09 65.9 37 70.3
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 2.4e-09 65.5 37 73.0
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.4e-09 65.5 54 50.0
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 2.4e-09 65.5 41 65.9
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 2.4e-09 65.5 39 69.2
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 3.1e-09 65.1 41 63.4
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 3.1e-09 65.1 55 54.5
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 3.1e-09 65.1 55 54.5
Dinv13219 Davidia involucrata HOM05D000386 ORTHO05D000406 4.1e-09 64.7 44 65.9
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 6.9e-09 63.9 41 61.0
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 6.9e-09 63.9 37 70.3
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 6.9e-09 63.9 37 70.3
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 6.9e-09 63.9 44 56.8
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 6.9e-09 63.9 37 67.6
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 6.9e-09 63.9 37 73.0
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 6.9e-09 63.9 44 65.9
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 6.9e-09 63.9 44 65.9
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 9.1e-09 63.5 41 68.3
Sed0022912 Sechium edule HOM05D003334 ORTHO05D022509 9.1e-09 63.5 40 62.5
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 1.2e-08 63.2 56 53.6
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.2e-08 63.2 51 56.9
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 1.5e-08 62.8 37 64.9
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 2.0e-08 62.4 38 71.1
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 2.0e-08 62.4 46 52.2
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 3.4e-08 61.6 40 62.5
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 4.5e-08 61.2 44 70.5
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 4.5e-08 61.2 51 54.9
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 5.9e-08 60.8 43 55.8
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 5.9e-08 60.8 45 57.8
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 7.7e-08 60.5 50 52.0
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 7.7e-08 60.5 41 61.0
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 7.7e-08 60.5 41 63.4
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 1.3e-07 59.7 52 55.8
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 1.7e-07 59.3 45 57.8
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 1.7e-07 59.3 62 51.6
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 2.2e-07 58.9 41 65.9
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.2e-07 58.9 41 65.9
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 3.8e-07 58.2 62 48.4
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 3.8e-07 58.2 37 59.5
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 5.0e-07 57.8 56 51.8
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 5.0e-07 57.8 39 64.1
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 6.5e-07 57.4 57 50.9
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 1.4e-06 56.2 41 58.5
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.4e-06 56.2 51 51.0
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 2.5e-06 55.5 48 54.2
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 2.5e-06 55.5 51 51.0
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 2.5e-06 55.5 37 64.9
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 3.2e-06 55.1 56 55.4
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 4.2e-06 54.7 39 59.0
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 7.2e-06 53.9 50 50.0
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 9.4e-06 53.5 49 53.1


User provided reference genes

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