Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1323.1 723 100.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1157.9 728 89.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1130.9 779 80.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 0.0e+00 1124.8 728 86.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.3e-306 1054.3 728 83.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.4e-294 1013.8 725 75.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 6.5e-238 827.8 728 67.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.2e-227 791.6 727 66.2
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.0e-215 753.1 729 57.3
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.9e-209 732.6 727 61.6
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.0e-203 714.1 727 60.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 6.4e-201 704.9 729 59.1
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.0e-200 701.4 724 57.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 7.3e-197 691.4 726 58.8
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.2e-196 690.6 726 58.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.6e-196 690.3 730 58.9
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.1e-196 689.9 724 58.8
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.2e-193 679.9 729 58.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.3e-189 666.0 727 57.4
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-185 652.5 727 57.9
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.4e-184 649.8 727 57.9
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.7e-183 646.4 726 56.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-182 643.7 727 57.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.9e-182 642.5 727 57.1
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.5e-181 640.6 736 54.9
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.3e-181 639.0 738 55.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.3e-181 638.3 727 57.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.6e-181 637.9 727 57.1
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.4e-179 633.3 734 53.5
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.1e-179 632.9 735 55.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.0e-179 632.5 727 56.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.6e-178 628.2 733 54.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.7e-177 627.1 742 55.4
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.8e-177 625.9 726 55.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-176 624.0 733 53.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.6e-175 619.0 731 54.0
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 6.0e-175 618.6 726 55.0
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.1e-174 615.5 728 54.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-173 614.4 733 54.3
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.5e-173 613.2 726 54.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.3e-173 612.5 746 54.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 5.6e-173 612.1 726 54.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.6e-172 609.4 728 54.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.4e-171 607.4 733 46.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 6.9e-171 605.1 733 53.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 6.9e-171 605.1 756 52.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.4e-168 596.7 729 52.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 5.4e-168 595.5 794 44.3
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.1e-167 593.6 724 53.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.6e-167 592.4 732 46.6
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.9e-165 587.0 738 51.4
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.6e-165 584.7 731 51.8
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.1e-164 583.6 729 51.3
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.1e-164 583.6 728 50.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.1e-164 583.6 729 52.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.1e-163 581.3 732 53.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.2e-161 573.5 729 52.9
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.2e-161 573.5 693 54.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.9e-161 573.2 732 46.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.6e-159 567.4 766 50.5
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.1e-159 567.0 727 52.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.1e-159 567.0 726 51.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.0e-158 564.7 725 53.5
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.3e-158 564.3 729 51.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.9e-158 562.8 735 51.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-157 561.2 729 52.1
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.5e-157 560.8 725 53.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.7e-156 556.2 731 52.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 8.2e-156 555.1 725 51.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 8.2e-156 555.1 727 53.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.1e-155 553.1 728 50.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.8e-154 548.9 513 66.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.9e-153 546.6 725 50.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.8e-153 546.2 726 50.7
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.2e-152 542.7 728 51.6
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 5.5e-152 542.3 657 55.6
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 7.1e-152 542.0 725 50.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-151 541.2 726 50.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 4.6e-151 539.3 725 52.4
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 7.9e-151 538.5 726 49.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.0e-150 538.1 729 49.7
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.0e-150 536.6 725 50.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.5e-149 534.3 736 49.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.9e-149 533.9 729 50.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.8e-148 530.0 725 50.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.7e-148 529.6 725 50.6
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 6.3e-148 528.9 729 49.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.5e-146 524.2 732 44.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.5e-146 522.7 727 50.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 5.9e-146 522.3 731 48.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.9e-145 520.0 681 52.4
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 3.8e-145 519.6 726 49.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.2e-143 514.6 730 47.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.6e-143 513.1 658 53.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.1e-139 500.0 720 49.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-137 495.0 732 47.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.9e-135 485.3 739 47.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.2e-132 477.2 735 46.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.1e-131 473.0 731 48.2
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-129 467.6 732 49.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-128 464.5 554 46.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-126 456.1 548 46.7
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.7e-126 455.7 658 48.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.8e-123 447.6 739 47.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.6e-122 444.5 736 38.7
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 5.0e-121 439.5 479 61.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-120 438.3 513 56.9
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.6e-119 433.3 751 41.1
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.6e-119 433.3 752 42.4
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.0e-118 430.3 723 37.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.4e-117 426.4 598 51.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.7e-116 424.5 463 55.7
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.6e-114 417.9 737 37.6
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 6.1e-111 406.0 735 35.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 4.8e-108 396.4 734 35.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.6e-101 374.0 656 46.0
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.5e-98 363.2 519 52.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.4e-91 341.7 557 39.5
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.9e-88 331.3 558 39.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.5e-77 295.0 339 47.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.9e-77 292.4 489 38.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-76 291.6 474 39.5
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 3.9e-73 280.4 382 42.9
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.9e-72 278.1 727 39.2
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.6e-71 275.0 427 50.8
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.0e-65 254.2 454 37.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.2e-63 248.8 263 64.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.4e-59 235.3 258 69.4
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-53 215.7 273 44.7
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.4e-46 192.2 221 48.9
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.6e-42 178.7 712 28.5
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.3e-41 174.9 194 46.9
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 3.0e-41 174.5 126 66.7
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.3e-40 171.0 295 36.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.9e-36 157.1 126 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.2e-35 154.5 262 34.7
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.5e-32 145.6 135 53.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.4e-30 139.0 533 26.3
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.8e-30 138.7 136 55.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.1e-30 137.5 167 46.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 7.7e-29 133.3 140 47.9
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.2e-28 131.7 126 54.0
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 6.5e-28 130.2 121 54.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 4.2e-27 127.5 158 44.9
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.1e-26 123.6 125 51.2
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 7.9e-26 123.2 75 80.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.9e-25 120.9 220 35.0
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 3.7e-23 114.4 110 55.5
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-23 113.2 113 51.3
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-23 113.2 113 52.2
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-23 113.2 113 52.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.1e-22 112.8 159 45.9
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.1e-22 109.8 108 51.9
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-21 108.2 98 58.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.7e-21 106.7 116 49.1
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-20 105.9 113 49.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.7e-20 105.5 129 47.3
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.8e-20 104.4 284 29.2
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-20 104.0 113 51.3
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-19 101.7 113 47.8
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-19 100.5 113 50.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-17 95.9 98 55.1
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.1e-14 84.3 65 64.6
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.0e-13 82.0 50 72.0
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 5.9e-13 80.5 71 53.5
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-13 80.1 65 64.6
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-12 78.2 65 63.1
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-11 76.3 65 63.1
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-11 76.3 65 63.1
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-11 75.9 65 61.5
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.4e-11 75.9 284 28.5
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-11 75.5 65 61.5
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.7e-10 71.6 267 26.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 8.0e-10 70.1 127 34.6
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.8e-09 68.9 112 39.3
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 6.7e-09 67.0 55 52.7
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-07 62.4 86 45.3
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 7.0e-06 57.0 62 53.2


User provided reference genes

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