Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.4e-67 258.8 142 100.0
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.6e-66 255.4 142 98.6
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 4.9e-65 251.1 142 97.2
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 9.3e-64 246.9 142 96.5
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.3e-64 246.9 142 96.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.1e-53 213.4 118 90.7
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 7.4e-53 210.7 118 87.3
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.7e-53 210.3 116 96.6
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-51 206.8 123 83.7
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.4e-51 205.7 126 84.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 3.1e-51 205.3 118 88.1
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 3.1e-51 205.3 126 84.9
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 5.3e-51 204.5 123 83.7
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 5.3e-51 204.5 116 87.1
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 6.9e-51 204.1 126 83.3
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 9.1e-51 203.8 126 82.5
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-50 203.4 123 84.6
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.2e-50 203.4 123 82.9
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.5e-50 203.0 127 82.7
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.5e-50 203.0 123 81.3
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.5e-50 203.0 126 82.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.0e-50 202.6 123 82.9
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.6e-50 202.2 126 83.3
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.4e-50 201.8 123 80.5
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 7.7e-50 200.7 123 81.3
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 7.7e-50 200.7 124 80.6
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 1.7e-49 199.5 122 79.5
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 2.2e-49 199.1 126 81.7
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.2e-49 199.1 124 80.6
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 2.2e-49 199.1 139 74.8
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.9e-49 198.7 126 78.6
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 2.9e-49 198.7 123 80.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 3.8e-49 198.4 123 81.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 3.8e-49 198.4 118 81.4
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.8e-49 198.4 123 79.7
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 8.5e-49 197.2 126 81.0
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 8.5e-49 197.2 123 79.7
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.4e-48 196.4 124 81.5
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.4e-48 196.4 126 77.8
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.9e-48 196.1 118 83.9
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.9e-48 196.1 118 81.4
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 2.5e-48 195.7 118 81.4
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 4.2e-48 194.9 116 81.9
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 5.5e-48 194.5 126 76.2
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 5.5e-48 194.5 126 78.6
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 5.5e-48 194.5 126 81.0
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 7.2e-48 194.1 118 80.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 9.4e-48 193.7 136 82.4
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.6e-47 193.0 123 77.2
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.7e-47 192.2 125 79.2
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 3.6e-47 191.8 126 76.2
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.6e-47 191.4 126 78.6
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 4.6e-47 191.4 118 80.5
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.6e-47 191.4 122 77.0
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 6.1e-47 191.0 126 77.0
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 7.9e-47 190.7 126 77.8
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.4e-46 189.9 126 78.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.3e-46 189.1 127 78.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.3e-46 189.1 118 78.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.3e-46 189.1 118 78.0
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.0e-46 188.7 123 78.9
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.0e-46 188.7 126 77.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.9e-46 188.3 123 74.8
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.1e-46 188.0 122 75.4
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 5.1e-46 188.0 115 79.1
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.1e-46 188.0 126 75.4
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 5.1e-46 188.0 126 75.4
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 5.1e-46 188.0 126 75.4
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 6.7e-46 187.6 126 73.8
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.1e-45 186.8 126 74.6
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.5e-45 186.4 126 74.6
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.5e-45 186.4 126 74.6
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 2.6e-45 185.7 103 98.1
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.6e-45 185.7 123 74.0
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.3e-45 185.3 124 77.4
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 4.4e-45 184.9 126 73.0
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.7e-45 184.5 126 74.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 7.4e-45 184.1 99 89.9
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.3e-44 183.3 124 74.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.3e-44 183.3 116 75.9
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.8e-44 182.2 126 73.8
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 4.8e-44 181.4 141 66.7
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 6.3e-44 181.0 130 71.5
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.1e-43 180.3 97 89.7
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.1e-43 180.3 126 71.4
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.8e-43 179.5 122 73.0
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 2.4e-43 179.1 130 73.8
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.4e-43 179.1 123 72.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 5.3e-43 177.9 124 72.6
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 9.1e-43 177.2 127 73.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 9.1e-43 177.2 123 69.1
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-42 176.4 117 72.6
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 2.0e-42 176.0 138 68.8
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.0e-41 173.7 118 75.4
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-41 173.3 127 69.3
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 3.8e-41 171.8 127 71.7
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.4e-40 169.9 103 79.6
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.9e-40 169.5 106 82.1
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.5e-40 169.1 127 70.1
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 3.2e-40 168.7 161 58.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 4.2e-40 168.3 124 71.0
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.2e-40 168.3 103 78.6
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 5.5e-40 167.9 127 67.7
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 9.4e-40 167.2 122 70.5
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.6e-39 166.4 122 70.5
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.6e-39 166.4 126 71.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 2.1e-39 166.0 126 69.0
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.1e-39 166.0 111 73.0
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 3.6e-39 165.2 127 66.9
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 4.7e-39 164.9 127 67.7
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.8e-38 162.9 122 67.2
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.8e-38 162.9 122 67.2
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.8e-38 162.9 122 67.2
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.3e-38 162.5 122 68.9
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 5.2e-38 161.4 111 70.3
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 5.2e-38 161.4 111 70.3
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 6.7e-38 161.0 115 67.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.1e-37 160.2 164 54.3
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.5e-37 159.8 115 69.6
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.0e-37 159.5 123 64.2
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.7e-37 157.9 152 57.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.3e-36 156.8 158 55.7
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.8e-36 155.6 113 64.6
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 2.8e-36 155.6 95 78.9
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.1e-35 152.1 119 62.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.3e-35 151.4 87 82.8
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 7.0e-35 151.0 90 82.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.6e-34 149.1 134 59.7
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.6e-34 149.1 108 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.5e-34 148.7 123 57.7
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 4.5e-34 148.3 126 66.7
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-33 146.0 126 58.7
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.2e-33 146.0 107 63.6
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-32 143.7 123 64.2
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 3.2e-32 142.1 95 72.6
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 7.2e-32 141.0 123 64.2
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 4.7e-31 138.3 81 85.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.8e-30 136.3 100 63.0
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 3.0e-30 135.6 94 71.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 5.2e-30 134.8 107 63.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.5e-29 133.3 90 71.1
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 2.7e-26 122.5 69 85.5
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 4.5e-26 121.7 77 79.2
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-24 117.1 78 74.4
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.5e-24 116.7 95 65.3
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.2e-24 115.2 77 70.1
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 9.4e-24 114.0 73 72.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.0e-22 110.5 63 79.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 8.8e-22 107.5 119 45.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.3e-20 100.9 94 53.2
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.4e-19 99.4 123 49.6
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.1e-19 99.0 89 52.8
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 2.0e-18 96.3 95 45.3
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.7e-17 93.2 56 80.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 8.0e-15 84.3 104 41.3
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 8.0e-15 84.3 52 76.9
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 3.7e-12 75.5 93 36.6
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.2e-10 70.5 57 59.6
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.2e-10 70.5 46 73.9
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 5.2e-06 55.1 90 28.9
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 8.9e-06 54.3 33 78.8


User provided reference genes

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