Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 2353.9 1178 100.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 2267.3 1178 96.4
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 2264.6 1178 96.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 2219.5 1178 95.1
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 2157.5 1180 91.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1839.7 1107 86.2
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1829.7 1173 77.9
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1814.7 1173 78.9
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1553.1 1181 66.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1522.3 1396 58.3
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1519.6 1177 65.7
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1508.0 1169 66.0
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1494.9 1173 63.9
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1487.2 1174 64.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1483.0 1182 62.0
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1477.6 1192 63.9
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1476.1 1135 66.9
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1464.1 1178 63.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1460.7 1226 60.5
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1450.3 1179 63.3
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1441.0 1175 62.4
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1436.0 1174 63.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1434.5 1172 62.4
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1409.8 1183 61.1
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1394.8 1182 60.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1390.2 1182 60.3
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1388.2 1175 60.3
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1384.0 1186 60.5
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1378.6 1177 60.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1370.5 1214 59.1
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1369.0 1177 60.5
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1366.7 1185 58.8
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1357.4 1174 60.4
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1345.5 1187 58.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1345.1 1179 58.8
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1342.4 1177 58.9
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1339.7 1167 59.7
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1329.3 1166 58.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1327.0 1172 58.2
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1323.1 1173 58.4
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1322.4 1173 58.1
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1322.0 1172 58.1
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1320.8 1197 57.8
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1314.3 1169 58.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1311.6 1174 58.2
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1307.0 1187 57.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1304.3 1172 57.9
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1303.5 1171 57.3
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1302.3 1169 58.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1302.0 1172 57.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1298.1 1174 57.8
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1297.7 1173 57.2
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1282.3 1181 56.3
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1281.9 1178 56.6
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1275.8 1171 56.1
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1273.8 1185 56.4
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1271.1 1172 56.1
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1270.0 1182 55.8
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1268.8 1182 56.6
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1268.4 1182 56.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1265.8 1387 51.2
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1263.1 1037 61.8
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1055 61.5
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1253.4 1173 56.3
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1252.3 1181 55.5
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1246.9 1213 55.1
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1243.4 1173 55.6
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1234.2 1178 54.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1233.8 1172 54.2
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1230.3 1182 54.6
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1216.8 1163 54.7
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1216.8 1181 54.8
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1205.7 1171 54.7
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1049 59.2
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1176.4 1171 52.9
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1175.2 1172 53.1
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1154.0 1185 51.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1151.3 1183 52.0
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1147.1 1136 53.7
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1090.1 1219 49.3
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 1.2e-310 1070.1 1194 48.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 6.1e-310 1067.8 1120 51.6
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 6.7e-309 1064.3 1193 48.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.9e-303 1046.2 1116 50.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 8.0e-294 1014.2 1168 49.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 3.1e-290 1002.3 1184 46.5
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 3.6e-270 935.6 839 58.3
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.4e-260 902.5 759 62.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 8.4e-235 818.1 716 58.9
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.4e-229 800.0 804 54.4
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.3e-219 767.7 1106 41.8
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.6e-209 734.2 766 51.8
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 4.0e-184 649.8 1214 36.2
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.6e-175 620.5 580 55.7
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 8.6e-163 578.9 1199 33.7
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 3.7e-150 537.0 422 64.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.0e-147 528.9 615 48.3
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.1e-146 525.4 468 58.1
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.3e-131 475.3 1125 33.4
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.8e-128 464.9 390 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.5e-122 444.5 791 35.7
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.0e-107 394.4 426 50.7
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.8e-99 368.6 531 40.3
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.0e-94 352.8 418 44.3
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.7e-86 325.5 287 59.2
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 8.0e-68 263.5 216 62.5
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.4e-66 257.7 203 62.1
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 5.9e-63 247.3 178 71.9
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-61 242.7 1127 25.7
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 6.1e-60 237.3 192 65.1
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.0e-46 191.8 252 41.3
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 6.4e-41 174.1 123 70.7
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.6e-39 169.5 206 46.1
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.0e-31 141.0 339 31.0
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 4.0e-27 128.3 157 43.9
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.0e-22 113.6 483 25.5
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 3.8e-17 95.1 72 65.3
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 6.4e-17 94.4 73 61.6
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 9.3e-16 90.5 53 77.4
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 7.8e-15 87.4 53 81.1
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.0e-14 87.0 107 46.7
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 3.0e-14 85.5 115 47.0
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 9.6e-13 80.5 183 30.1
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 8.1e-12 77.4 79 50.6
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.4e-08 66.6 48 66.7
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 2.1e-07 62.8 46 63.0
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.7e-07 62.4 68 51.5
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.6e-07 61.6 46 63.0


User provided reference genes

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