Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 2520.0 1325 100.0
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 2496.5 1325 99.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 2272.3 1329 90.6
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 2247.2 1204 98.4
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1897.9 1344 73.7
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1696.0 1362 67.2
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1691.8 1356 67.0
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1685.2 1357 67.1
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1684.1 1356 67.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1659.0 1334 66.9
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1641.7 1354 66.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1627.5 1357 64.7
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1608.6 1355 64.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1608.2 1359 64.6
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1601.6 1351 64.2
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1587.8 1350 63.7
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1576.6 1355 63.5
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1566.6 1360 63.2
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1557.0 1344 62.6
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1555.8 1344 62.5
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1553.9 1369 62.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1550.8 1354 63.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1549.6 1389 62.1
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1548.1 1397 61.7
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1536.9 1364 61.4
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1530.4 1350 61.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1525.4 1349 61.0
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1521.1 1347 61.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1507.3 1367 60.5
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1491.5 1344 60.8
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1488.0 1347 59.6
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1486.5 1351 58.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1485.7 1350 59.9
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1480.3 1360 59.1
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1479.9 1361 59.9
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1478.4 1347 59.7
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1476.1 1350 59.6
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1474.5 1364 59.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1471.1 1352 59.3
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1469.5 1335 60.6
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1459.5 1372 59.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1456.0 1347 58.6
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1455.3 1358 60.6
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1454.9 1351 57.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1454.1 1330 60.0
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1451.4 1372 58.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1441.4 1352 60.0
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1440.6 1352 59.5
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1439.1 1356 59.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1437.2 1358 60.2
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1434.5 1329 58.1
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1429.8 1335 58.7
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1429.1 1288 62.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1422.1 1402 57.1
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1409.0 1357 57.0
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1407.1 1372 57.1
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1405.2 1336 57.6
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1404.0 1354 58.1
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1403.3 1358 57.6
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1401.7 1338 58.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1401.0 1343 57.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1399.4 1364 57.0
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1375.1 1346 56.4
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1367.8 1390 56.0
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1354.0 1190 61.3
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1353.2 1266 57.5
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1349.0 1359 55.8
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1347.8 1323 56.6
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1347.0 1317 57.3
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1346.6 1326 56.9
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1346.3 1328 56.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1345.1 1229 59.9
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1343.6 1218 59.3
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1341.3 1358 56.1
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1340.1 1327 57.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1339.3 1320 56.5
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1338.9 1353 57.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1338.9 1371 55.3
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1337.8 1351 55.4
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1334.7 1320 56.4
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1330.9 1321 56.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1330.1 976 71.6
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1327 56.0
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1320.1 1323 55.9
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1306.6 1259 56.8
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1303.9 1359 54.5
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1300.4 1067 66.0
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1273.8 1286 55.0
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1255.7 1268 56.5
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1254.6 1398 53.0
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1246.1 1369 53.2
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1197.6 1337 51.7
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1193.3 1060 60.2
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1187.2 1367 49.7
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1186.4 1071 59.9
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1184.9 1071 59.6
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1117.8 1044 58.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1099.0 1348 48.3
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.3e-304 1048.9 1177 49.9
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 4.5e-301 1038.5 1343 48.1
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 4.2e-299 1031.9 1336 46.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 9.0e-294 1014.2 1314 48.9
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.9e-289 998.8 948 56.6
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 9.0e-278 961.1 932 55.6
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.1e-264 917.5 756 64.0
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 3.7e-255 885.9 1011 49.6
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.5e-253 879.4 1142 46.8
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 4.8e-239 832.4 760 60.4
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.0e-232 810.4 1039 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.7e-231 806.2 1403 40.1
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.9e-228 796.6 688 59.6
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 6.1e-226 788.9 826 54.0
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.1e-218 763.8 828 51.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.1e-218 763.8 1108 42.8
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 3.4e-200 703.4 1437 35.1
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.4e-183 646.0 500 67.2
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.2e-166 590.5 454 67.4
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 5.3e-161 573.2 1176 36.3
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 5.3e-153 546.6 620 51.0
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 6.9e-153 546.2 405 70.4
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 3.9e-148 530.4 1521 30.0
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.1e-139 502.3 411 65.0
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 6.6e-119 433.3 341 68.3
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.3e-106 392.5 301 68.8
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.4e-98 363.6 309 60.8
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.7e-90 339.0 274 67.9
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.1e-84 319.7 368 50.8
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 8.1e-77 293.5 916 27.4
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.8e-66 258.1 435 40.9
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.4e-65 255.4 350 41.1
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 6.5e-58 230.7 606 33.7
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 7.4e-54 217.2 245 51.8
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.9e-42 178.7 153 60.1
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.4e-35 155.2 114 64.0
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-32 146.7 106 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.9e-31 141.7 233 39.1
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 3.7e-29 135.2 82 76.8
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.6e-27 129.0 87 72.4
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.0e-26 127.1 114 59.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.2e-25 122.1 182 44.0
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 8.8e-23 114.0 115 50.4
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-12 80.1 81 54.3
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-12 80.1 81 54.3
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 5.4e-12 78.2 84 47.6
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.9e-09 69.7 50 70.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.5e-09 68.2 71 50.7
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 3.6e-08 65.5 89 41.6
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.4e-07 63.5 153 28.8
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 4.0e-07 62.0 153 26.8
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 8.8e-07 60.8 189 25.9
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 8.8e-07 60.8 136 25.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.2e-06 60.5 129 27.1
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.2e-06 60.5 136 26.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 1.2e-06 60.5 136 25.7
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.2e-06 60.5 51 56.9
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.5e-06 60.1 150 26.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.5e-06 60.1 129 27.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 2.0e-06 59.7 135 26.7
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 2.0e-06 59.7 135 27.4
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 2.6e-06 59.3 129 26.4
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 2.6e-06 59.3 139 25.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 3.4e-06 58.9 136 25.7
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 4.4e-06 58.5 135 27.4
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 4.4e-06 58.5 59 52.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 4.4e-06 58.5 161 23.6
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 5.7e-06 58.2 153 25.5
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 5.7e-06 58.2 129 25.6
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 5.7e-06 58.2 100 41.0
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 5.7e-06 58.2 135 25.9
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 5.7e-06 58.2 150 25.3
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 7.5e-06 57.8 150 25.3
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 7.5e-06 57.8 161 23.6
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 7.5e-06 57.8 136 25.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 9.8e-06 57.4 150 26.0
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 9.8e-06 57.4 150 26.0
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 9.8e-06 57.4 129 27.9
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 9.8e-06 57.4 150 24.0


User provided reference genes

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