Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 3.8e-88 328.2 171 100.0
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 5.0e-88 327.8 171 99.4
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.4e-77 293.1 171 90.6
FAN17G1984 Fragaria x ananassa HOM05D007672 ORTHO05D009617 4.9e-59 231.5 131 90.8
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 8.6e-48 194.1 150 70.7
FAN22G0706 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.4e-29 133.7 65 100.0
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 5.1e-24 115.2 141 53.2
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 6.9e-21 104.8 135 43.7
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 4.9e-19 98.6 120 45.8
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 4.9e-19 98.6 114 50.9
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 1.4e-18 97.1 121 51.2
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 1.9e-18 96.7 134 46.3
THA.LOC104823640 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 3.2e-18 95.9 141 44.0
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 1.6e-17 93.6 112 46.4
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 3.5e-17 92.4 125 42.4
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 3.5e-17 92.4 119 46.2
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 1.0e-16 90.9 129 42.6
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 1.0e-16 90.9 126 44.4
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 1.8e-16 90.1 125 43.2
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 3.0e-16 89.4 133 43.6
THA.LOC104805091 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 3.0e-16 89.4 137 42.3
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 3.9e-16 89.0 144 41.0
Thhalv10009881m.g Eutrema salsugineum HOM05D007672 ORTHO05D009617 1.1e-15 87.4 107 45.8
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 1.5e-15 87.0 124 43.5
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 1.5e-15 87.0 127 44.1
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 4.3e-15 85.5 111 47.7
Dinv06126 Davidia involucrata HOM05D008473 ORTHO05D009617 4.3e-15 85.5 100 47.0
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 4.3e-15 85.5 121 43.8
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 5.7e-15 85.1 134 41.0
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 7.4e-15 84.7 124 42.7
BraA06t24260Z Brassica rapa HOM05D007672 ORTHO05D009617 1.6e-14 83.6 111 46.8
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 3.7e-14 82.4 124 41.9
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 3.7e-14 82.4 122 45.1
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 4.8e-14 82.0 112 45.5
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 8.2e-14 81.3 125 42.4
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 1.1e-13 80.9 147 36.7
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 1.1e-13 80.9 125 42.4
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.1e-13 80.9 125 42.4
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.8e-13 80.1 125 42.4
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 2.4e-13 79.7 112 44.6
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 2.4e-13 79.7 150 38.0
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 3.1e-13 79.3 113 43.4
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 5.3e-13 78.6 125 40.8
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 6.9e-13 78.2 123 41.5
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 6.9e-13 78.2 118 42.4
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 1.2e-12 77.4 111 40.5
CDE05G0014 Ceratophyllum demersum HOM05D007672 ORTHO05D009617 1.5e-12 77.0 140 36.4
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 1.5e-12 77.0 155 36.8
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 1.5e-12 77.0 120 42.5
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 2.0e-12 76.6 141 38.3
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 4.5e-12 75.5 114 41.2
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 4.5e-12 75.5 124 39.5
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 5.8e-12 75.1 132 40.9
TWI15G1176 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 5.8e-12 75.1 139 36.0
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 7.6e-12 74.7 110 41.8
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 7.6e-12 74.7 130 38.5
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 1.0e-11 74.3 153 35.9
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 1.3e-11 73.9 114 40.4
MD13G1018900 Malus domestica HOM05D007672 ORTHO05D009617 1.3e-11 73.9 83 53.0
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 1.3e-11 73.9 139 38.8
Psat6g051280 Pisum sativum HOM05D007672 ORTHO05D009617 1.3e-11 73.9 99 47.5
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 2.2e-11 73.2 125 38.4
PGR044G0098 Punica granatum HOM05D007672 ORTHO05D009617 3.8e-11 72.4 119 39.5
BolC8t52097H Brassica oleracea HOM05D007672 ORTHO05D009617 5.0e-11 72.0 122 39.3
Nitab4.5_0004855g0020 Nicotiana tabacum HOM05D007672 ORTHO05D009617 5.0e-11 72.0 149 37.6
BcaC07g41540 Brassica carinata HOM05D007672 ORTHO05D009617 6.5e-11 71.6 118 39.8
C08p45430 Brassica napus HOM05D007672 ORTHO05D009617 6.5e-11 71.6 118 39.8
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 8.4e-11 71.2 107 38.3
Aqoxy3G04074 Aquilegia oxysepala HOM05D007672 ORTHO05D009617 1.1e-10 70.9 123 37.4
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.4e-10 70.5 110 41.8
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 1.9e-10 70.1 113 39.8
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 2.5e-10 69.7 110 41.8
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 2.5e-10 69.7 110 41.8
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 3.2e-10 69.3 116 38.8
Sabra12G0030500 Salix brachista HOM05D000154 ORTHO05D009617 5.5e-10 68.6 176 33.5
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 9.3e-10 67.8 110 38.2
Migut.D01220 Erythranthe guttata HOM05D007672 ORTHO05D009617 1.6e-09 67.0 122 34.4
Gohir.A12G270800 Gossypium hirsutum HOM05D007672 ORTHO05D009617 1.6e-09 67.0 110 38.2
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 2.7e-09 66.2 114 36.8
DCAR_023572 Daucus carota HOM05D007672 ORTHO05D009617 2.7e-09 66.2 132 35.6
CAN.G65.98 Capsicum annuum HOM05D007672 ORTHO05D009617 3.5e-09 65.9 120 36.7
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 4.6e-09 65.5 128 35.9
Gohir.D12G271200 Gossypium hirsutum HOM05D007672 ORTHO05D009617 6.1e-09 65.1 110 36.4
VMungo0464G2034 Vigna mungo HOM05D000162 ORTHO05D009617 1.0e-08 64.3 110 39.1
Solyc06g072480.1 Solanum lycopersicum HOM05D007672 ORTHO05D009617 1.8e-08 63.5 117 35.9
MD17G1102600 Malus domestica HOM05D000779 ORTHO05D000246 3.0e-08 62.8 137 30.7
GSVIVG01008479001 Vitis vinifera HOM05D007672 ORTHO05D009617 3.0e-08 62.8 55 56.4
Zm00001eb117820 Zea mays HOM05D000779 ORTHO05D000246 3.9e-08 62.4 118 33.1
Zm00001eb299420 Zea mays HOM05D000779 ORTHO05D000246 3.9e-08 62.4 118 33.9
Lj2g0015752 Lotus japonicus HOM05D007672 ORTHO05D009617 5.1e-08 62.0 90 43.3
SEGI_36691 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 6.7e-08 61.6 114 35.1
A09p61810 Brassica napus HOM05D007672 ORTHO05D009617 1.1e-07 60.8 118 36.4
BraA09t41549Z Brassica rapa HOM05D007672 ORTHO05D009617 1.1e-07 60.8 118 36.4
CSS0036489 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 1.1e-07 60.8 137 31.4
Zm00001eb052120 Zea mays HOM05D000779 ORTHO05D000246 1.1e-07 60.8 129 30.2
Os03g0771500 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 1.5e-07 60.5 126 30.2
TAR376G0473 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.9e-07 60.1 139 32.4
Zm00001eb058930 Zea mays HOM05D000779 ORTHO05D000246 1.9e-07 60.1 130 33.1
AT1G14760 Arabidopsis thaliana HOM05D007672 ORTHO05D009617 2.5e-07 59.7 80 46.2
Eucgr.K02285 Eucalyptus grandis HOM05D007672 ORTHO05D009617 2.5e-07 59.7 51 54.9
THA.LOC104806966 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 2.5e-07 59.7 112 34.8
SEGI_06213 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 3.3e-07 59.3 136 32.4
Haze_12781 Corylus avellana HOM05D000779 ORTHO05D000246 4.3e-07 58.9 129 31.0
Zm00001eb055940 Zea mays HOM05D000779 ORTHO05D000246 4.3e-07 58.9 161 32.9
Manes.17G027300 Manihot esculenta HOM05D000779 ORTHO05D000246 7.4e-07 58.2 131 34.4
SEGI_07794 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 7.4e-07 58.2 139 34.5
TPR.G14450 Trifolium pratense HOM05D000779 ORTHO05D000246 7.4e-07 58.2 122 32.0
HanXRQChr05g0163601 Helianthus annuus HOM05D000779 ORTHO05D000246 9.7e-07 57.8 118 34.7
Lsat_1_v5_gn_6_108340 Lactuca sativa HOM05D000779 ORTHO05D000246 9.7e-07 57.8 126 32.5
Atru.chr9.2512 Acer truncatum HOM05D000779 ORTHO05D000246 1.3e-06 57.4 118 31.4
MSTRG.24397 Avicennia marina HOM05D000779 ORTHO05D000246 1.3e-06 57.4 113 32.7
Aa31sc59G10 Aethionema arabicum HOM05D000779 ORTHO05D000246 1.6e-06 57.0 128 30.5
AL6G41780 Arabidopsis lyrata HOM05D000779 ORTHO05D000246 1.6e-06 57.0 111 35.1
Carub.0006s2670 Capsella rubella HOM05D000779 ORTHO05D000246 1.6e-06 57.0 129 31.8
Cpa.g.sc160.20 Carica papaya HOM05D000779 ORTHO05D000246 1.6e-06 57.0 132 29.5
SalBow7G4052 Salvia bowleyana HOM05D000779 ORTHO05D000246 1.6e-06 57.0 117 31.6
SHI02231 Sapria himalayana HOM05D000779 ORTHO05D000246 1.6e-06 57.0 115 33.9
vmacro21400 Vaccinium macrocarpon HOM05D000779 ORTHO05D000246 1.6e-06 57.0 140 31.4
AT4G08150 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 2.2e-06 56.6 129 31.8
Os07g0129700 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 2.2e-06 56.6 153 28.1
Phvul.006G145800 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 2.2e-06 56.6 114 33.3
Sc26g0004260 Simmondsia chinensis HOM05D000779 ORTHO05D000246 2.2e-06 56.6 136 31.6
Hma1.2p1_0046F.1_g026670 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 2.8e-06 56.2 132 32.6
MD09G1112500 Malus domestica HOM05D000779 ORTHO05D000246 2.8e-06 56.2 137 27.7
SGA_v2.0_scaffold53G19283 Striga asiatica HOM05D000779 ORTHO05D000246 2.8e-06 56.2 109 30.3
CiPaw.04G111400 Carya illinoinensis HOM05D000779 ORTHO05D000246 3.7e-06 55.8 155 31.0
ClCG08G017830 Citrullus lanatus HOM05D000779 ORTHO05D000246 3.7e-06 55.8 113 34.5
Cc09_g01190 Coffea canephora HOM05D000779 ORTHO05D000246 3.7e-06 55.8 121 34.7
Glyma.15G111900 Glycine max HOM05D000779 ORTHO05D000246 3.7e-06 55.8 114 32.5
Manes.18G052901 Manihot esculenta HOM05D000779 ORTHO05D000246 3.7e-06 55.8 149 27.5
QL08p031058 Quercus lobata HOM05D000779 ORTHO05D000246 3.7e-06 55.8 123 31.7
SEGI_39888 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 3.7e-06 55.8 137 30.7
Sopen01g044020 Solanum pennellii HOM05D000779 ORTHO05D000246 3.7e-06 55.8 113 30.1
THA.LOC104825802 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 3.7e-06 55.8 113 33.6
TWI60G0463 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 3.7e-06 55.8 108 35.2
unitig_32.g11044 Utricularia gibba HOM05D000779 ORTHO05D000246 3.7e-06 55.8 152 27.6
unitig_8.g3938 Utricularia gibba HOM05D000779 ORTHO05D000246 3.7e-06 55.8 131 30.5
Zm00001eb217470 Zea mays HOM05D000779 ORTHO05D000246 3.7e-06 55.8 119 31.9
Zm00001eb354880 Zea mays HOM05D000779 ORTHO05D000246 3.7e-06 55.8 111 35.1
CDE06G2668 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 4.8e-06 55.5 123 32.5
Gohir.A05G213100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.8e-06 55.5 136 30.9
Lj6g0027145 Lotus japonicus HOM05D000779 ORTHO05D000246 4.8e-06 55.5 113 31.9
Psat0s1183g0080 Pisum sativum HOM05D000779 ORTHO05D000246 4.8e-06 55.5 114 32.5
Ca_00692_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 6.3e-06 55.1 115 33.0
Glyma.07G263600 Glycine max HOM05D000779 ORTHO05D000246 6.3e-06 55.1 111 33.3
VMungo0540G1546 Vigna mungo HOM05D000779 ORTHO05D000246 6.3e-06 55.1 112 33.0
BcaB05g24583 Brassica carinata HOM05D000779 ORTHO05D000246 8.2e-06 54.7 117 30.8
CARHR259260 Cardamine hirsuta HOM05D000779 ORTHO05D000246 8.2e-06 54.7 124 29.0
CiPaw.03G156800 Carya illinoinensis HOM05D000779 ORTHO05D000246 8.2e-06 54.7 120 32.5
Nn1g07273 Nelumbo nucifera HOM05D000779 ORTHO05D000246 8.2e-06 54.7 120 30.8
Nitab4.5_0001207g0130 Nicotiana tabacum HOM05D000779 ORTHO05D000246 8.2e-06 54.7 113 34.5
Phvul.008G212100 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 8.2e-06 54.7 119 31.1
Prupe.1G416700 Prunus persica HOM05D000779 ORTHO05D000246 8.2e-06 54.7 135 30.4
QL10p009568 Quercus lobata HOM05D000779 ORTHO05D000246 8.2e-06 54.7 133 30.1
Sp6g10130 Schrenkiella parvula HOM05D000779 ORTHO05D000246 8.2e-06 54.7 115 32.2


User provided reference genes

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