Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 3.4e-59 231.5 119 100.0
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 2.5e-54 215.3 113 97.3
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 2.0e-27 125.9 75 90.7
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 2.6e-19 99.0 74 77.0
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-19 99.0 74 77.0
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-19 99.0 74 77.0
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-19 99.0 74 77.0
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 3.4e-19 98.6 73 78.1
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.7e-18 96.3 73 76.7
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 1.7e-18 96.3 74 73.0
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 73.0
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 73.0
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 73.0
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 71.6
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 71.6
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 71.6
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 5.0e-18 94.7 74 73.0
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 70.3
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 6.5e-18 94.4 74 71.6
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 70.3
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 70.3
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 8.5e-18 94.0 74 71.6
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.1e-17 93.6 74 70.3
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.1e-17 93.6 74 71.6
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 1.1e-17 93.6 74 70.3
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.1e-17 93.6 74 70.3
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 68.9
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.4e-17 93.2 74 70.3
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 1.9e-17 92.8 77 66.2
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.9e-17 92.8 74 70.3
FvH4_6g27412 Fragaria vesca HOM05D003395 ORTHO05D020046 1.9e-17 92.8 67 73.1
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.9e-17 92.8 74 70.3
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.9e-17 92.8 74 70.3
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.5e-17 92.4 74 68.9
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 2.5e-17 92.4 74 68.9
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 3.2e-17 92.0 75 68.0
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 3.2e-17 92.0 75 68.0
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 3.2e-17 92.0 75 68.0
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 3.2e-17 92.0 75 68.0
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.2e-17 92.0 75 69.3
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 3.2e-17 92.0 74 68.9
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 4.2e-17 91.7 74 68.9
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 4.2e-17 91.7 74 68.9
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 4.2e-17 91.7 74 68.9
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 4.2e-17 91.7 73 69.9
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 4.2e-17 91.7 73 69.9
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 4.2e-17 91.7 74 68.9
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 5.5e-17 91.3 74 67.6
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 67.6
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 68.9
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 67.6
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 67.6
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 68.9
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 7.2e-17 90.9 74 67.6
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 9.4e-17 90.5 74 67.6
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.2e-16 90.1 74 67.6
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.6e-16 89.7 74 67.6
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.6e-16 89.7 74 67.6
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 2.1e-16 89.4 74 64.9
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 2.7e-16 89.0 74 66.2
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 3.6e-16 88.6 74 66.2
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 4.6e-16 88.2 74 66.2
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 7.9e-16 87.4 74 64.9
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 2.3e-15 85.9 74 64.9
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.0e-15 85.5 75 66.7
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 5.1e-15 84.7 74 67.6
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 6.7e-15 84.3 100 53.0
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 2.5e-14 82.4 74 60.8
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 4.8e-13 78.2 73 57.5
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 6.3e-13 77.8 74 58.1
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 1.4e-12 76.6 97 45.4
BcaB06g29194 Brassica carinata HOM05D003395 ORTHO05D020046 4.1e-12 75.1 61 72.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.5e-11 73.2 65 67.7
CSS0011071 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 8.5e-10 67.4 50 68.0
SHI10457 Sapria himalayana HOM05D003395 ORTHO05D004087 1.9e-09 66.2 74 56.8
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 9.4e-09 63.9 143 37.8
CSS0037734 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 2.1e-08 62.8 62 53.2


User provided reference genes

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