Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 5.6e-141 504.2 244 100.0
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.6e-141 504.2 244 100.0
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.9e-137 491.1 244 97.1
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 4.1e-136 488.0 244 96.3
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.7e-135 485.3 244 95.5
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.3e-125 451.8 244 88.1
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 86.5
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.6e-119 433.0 244 84.4
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 6.0e-119 431.0 244 83.2
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.3e-117 425.2 244 81.1
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 9.6e-117 423.7 244 81.1
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 2.8e-116 422.2 246 81.7
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 8.1e-116 420.6 244 81.1
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 2.4e-115 419.1 260 77.3
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 3.1e-115 418.7 244 81.6
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 5.2e-115 417.9 246 79.7
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.5e-114 416.4 244 79.9
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.5e-114 416.4 245 80.4
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 2.6e-114 415.6 244 77.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 3.4e-114 415.2 244 80.7
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 3.4e-114 415.2 244 79.5
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 7.6e-114 414.1 244 79.1
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.6e-114 414.1 244 78.7
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 9.9e-114 413.7 244 80.7
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.3e-113 413.3 244 79.1
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.3e-113 413.3 242 78.9
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.9e-113 411.4 244 80.3
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.4e-113 411.0 244 80.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 6.4e-113 411.0 244 79.9
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 8.4e-113 410.6 244 78.7
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 1.9e-112 409.5 246 78.9
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 3.2e-112 408.7 244 78.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 4.2e-112 408.3 244 76.6
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 2.1e-111 406.0 244 77.9
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 2.7e-111 405.6 244 77.5
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 4.6e-111 404.8 244 78.3
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 6.0e-111 404.4 244 79.1
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.7e-110 402.9 244 78.7
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 3.9e-110 401.7 244 77.5
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 78.3
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 77.5
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 4.3e-109 398.3 242 76.0
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 5.6e-109 397.9 244 75.4
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 9.6e-109 397.1 244 77.0
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.3e-108 396.7 244 76.6
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 4.8e-108 394.8 230 80.0
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 75.4
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 75.8
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.1e-107 393.7 242 76.9
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.8e-107 392.9 243 74.9
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 2.4e-107 392.5 244 73.8
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.4e-107 392.5 245 75.1
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 3.1e-107 392.1 244 75.4
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 4.0e-107 391.7 244 74.2
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 4.0e-107 391.7 245 74.7
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 5.3e-107 391.3 245 74.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 9.0e-107 390.6 244 73.0
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 9.0e-107 390.6 244 75.4
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.2e-106 390.2 229 79.9
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.2e-106 390.2 244 76.6
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.5e-106 389.8 245 74.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.5e-106 389.8 243 74.9
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.5e-106 389.8 245 74.3
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.5e-106 389.8 275 68.4
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 2.6e-106 389.0 285 67.0
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.6e-106 389.0 245 75.1
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 4.5e-106 388.3 244 73.0
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 5.8e-106 387.9 244 73.4
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 5.8e-106 387.9 244 73.4
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.4
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 9.9e-106 387.1 229 79.5
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.3e-105 386.7 244 73.8
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 6.4e-105 384.4 245 73.1
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.4e-104 383.3 245 73.1
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 4.2e-104 381.7 240 72.1
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.4e-104 381.3 245 72.2
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 5.4e-104 381.3 245 72.7
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 9.3e-104 380.6 244 71.3
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.6e-103 379.8 296 62.8
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 2.7e-103 379.0 276 67.4
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 74.6
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 6.0e-103 377.9 231 76.2
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 7.9e-103 377.5 254 72.0
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.8e-102 376.3 237 73.4
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.8e-102 376.3 244 70.5
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.3e-102 375.9 214 80.8
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 6.2e-100 367.9 244 68.4
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.1e-99 367.1 241 72.6
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.4e-99 366.7 244 68.0
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.8e-99 366.3 205 85.4
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.3e-97 360.1 328 57.3
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.9e-93 346.3 208 75.0
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.6e-92 343.2 238 69.3
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.6e-90 335.9 205 77.6
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.9e-89 331.6 206 77.2
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 4.2e-88 328.6 281 56.6
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.3e-86 323.6 253 59.3
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.0e-82 309.7 244 62.3
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.6e-82 307.8 301 55.1
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.7e-81 306.6 244 63.1
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 2.9e-81 305.8 248 54.4
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 5.1e-78 295.0 220 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 4.8e-68 261.9 312 42.9
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.2e-65 253.1 249 51.4
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.9e-64 250.0 260 48.8
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.5e-58 228.8 251 48.6
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 3.2e-56 222.6 339 41.3
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 9.4e-56 221.1 237 47.3
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-54 217.2 147 74.8
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 2.8e-52 209.5 255 42.4
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.5e-48 195.3 126 77.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 7.2e-48 194.9 110 77.3
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.2e-40 169.1 120 66.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.4e-37 159.1 83 79.5
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.3e-36 157.5 97 78.4
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.3e-36 155.2 83 92.8
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.3e-36 155.2 83 92.8
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.5e-32 141.4 75 94.7
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.5e-24 116.7 59 86.4
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 8.6e-17 91.7 63 68.3
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.1e-16 91.3 95 49.5
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 6.8e-14 82.0 49 71.4
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 3.4e-13 79.7 49 69.4
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 3.4e-13 79.7 49 69.4
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.3e-12 77.8 122 39.3
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 4.9e-12 75.9 101 39.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.6e-10 70.9 43 67.4
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 5.1e-09 65.9 37 78.4
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 7.3e-08 62.0 38 65.8
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 9.5e-08 61.6 88 37.5
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 6.2e-07 58.9 87 35.6
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 8.1e-07 58.5 65 43.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-06 58.2 77 39.0
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.4e-06 57.0 76 38.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 2.4e-06 57.0 73 42.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.1e-06 56.6 76 36.8
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 5.2e-06 55.8 76 43.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.8e-06 55.5 76 39.5


User provided reference genes

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