Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 8.1e-201 703.7 412 100.0
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 3.9e-195 684.9 404 99.0
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 8.1e-177 624.0 422 91.0
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 4.2e-141 505.4 410 75.6
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 4.9e-105 385.6 441 64.6
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 9.7e-29 132.1 304 39.5
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 8.5e-25 119.0 321 36.8
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 1.2e-23 115.2 145 44.1
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 2.0e-21 107.8 255 33.3
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 3.3e-21 107.1 175 42.3
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 2.8e-20 104.0 263 32.3
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 4.8e-20 103.2 142 39.4
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 1.4e-19 101.7 166 38.6
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 2.4e-19 100.9 129 47.3
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 3.1e-19 100.5 213 37.1
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 7.0e-19 99.4 157 41.4
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 9.1e-19 99.0 258 33.7
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 9.1e-19 99.0 115 46.1
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 9.1e-19 99.0 115 46.1
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 9.1e-19 99.0 115 46.1
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 1.2e-18 98.6 85 54.1
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 2.7e-18 97.4 83 51.8
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 3.5e-18 97.1 171 39.8
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 4.5e-18 96.7 141 40.4
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 1.0e-17 95.5 206 35.4
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 1.0e-17 95.5 200 34.5
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 1.3e-17 95.1 213 36.2
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.7e-17 94.7 134 41.8
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.7e-17 94.7 125 41.6
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 2.2e-17 94.4 209 35.9
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 2.2e-17 94.4 127 41.7
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 5.0e-17 93.2 108 46.3
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 8.5e-17 92.4 200 38.0
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.5e-16 91.7 257 32.3
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.5e-16 91.7 119 42.9
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 1.9e-16 91.3 218 36.7
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 1.9e-16 91.3 112 45.5
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 3.2e-16 90.5 140 40.0
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 7.2e-16 89.4 325 29.8
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 2.1e-15 87.8 117 37.6
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 2.1e-15 87.8 124 40.3
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 2.1e-15 87.8 135 37.8
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 2.7e-15 87.4 121 38.0
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 3.6e-15 87.0 123 41.5
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 3.6e-15 87.0 86 47.7
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 4.7e-15 86.7 163 37.4
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 4.7e-15 86.7 69 53.6
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 6.1e-15 86.3 110 39.1
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 6.1e-15 86.3 81 49.4
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 8.0e-15 85.9 314 33.4
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 8.0e-15 85.9 335 27.8
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 8.0e-15 85.9 112 41.1
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.0e-14 85.5 122 36.9
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.4e-14 85.1 225 34.7
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 1.8e-14 84.7 85 43.5
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 2.3e-14 84.3 99 46.5
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 2.3e-14 84.3 72 51.4
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.0e-14 84.0 226 34.5
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 3.0e-14 84.0 138 37.0
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 3.0e-14 84.0 112 41.1
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 3.0e-14 84.0 262 31.7
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 4.0e-14 83.6 70 54.3
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 4.0e-14 83.6 69 55.1
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 5.2e-14 83.2 108 43.5
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 6.8e-14 82.8 116 41.4
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 8.8e-14 82.4 223 33.6
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 8.8e-14 82.4 105 41.9
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 8.8e-14 82.4 121 36.4
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.2e-13 82.0 132 40.9
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 1.2e-13 82.0 184 37.0
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 1.2e-13 82.0 137 39.4
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 1.5e-13 81.6 110 40.9
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 2.0e-13 81.3 239 33.1
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 2.0e-13 81.3 122 37.7
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.4e-13 80.5 69 55.1
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 3.4e-13 80.5 118 39.8
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 4.4e-13 80.1 229 31.9
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.4e-13 80.1 136 39.7
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.4e-13 80.1 103 38.8
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 5.7e-13 79.7 201 32.3
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 7.5e-13 79.3 91 47.3
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 7.5e-13 79.3 69 53.6
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 9.8e-13 79.0 223 33.2
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 9.8e-13 79.0 193 34.2
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.8e-13 79.0 69 53.6
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 9.8e-13 79.0 126 38.1
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 1.3e-12 78.6 127 36.2
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.3e-12 78.6 70 51.4
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.7e-12 78.2 239 32.2
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.7e-12 78.2 134 39.6
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 2.2e-12 77.8 82 47.6
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 3.7e-12 77.0 106 37.7
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 4.8e-12 76.6 228 30.7
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 6.3e-12 76.3 127 33.9
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 8.3e-12 75.9 295 30.2
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 1.1e-11 75.5 85 45.9
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 1.4e-11 75.1 74 50.0
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 1.4e-11 75.1 197 29.9
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 2.4e-11 74.3 248 27.8
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 4.1e-11 73.6 72 47.2
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 4.1e-11 73.6 103 42.7
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 5.4e-11 73.2 164 32.3
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 9.1e-11 72.4 270 30.0
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 1.2e-10 72.0 143 35.7
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 1.2e-10 72.0 145 38.6
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 1.6e-10 71.6 54 61.1
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 1.6e-10 71.6 235 29.4
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 2.0e-10 71.2 72 51.4
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 2.7e-10 70.9 112 36.6
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 2.7e-10 70.9 258 29.8
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 2.7e-10 70.9 83 38.6
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.7e-10 70.9 69 49.3
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 2.7e-10 70.9 229 27.5
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 5.9e-10 69.7 84 44.0
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 5.9e-10 69.7 78 46.2
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 5.9e-10 69.7 117 39.3
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 7.7e-10 69.3 92 45.7
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 7.7e-10 69.3 65 47.7
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.0e-09 68.9 212 31.6
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 1.0e-09 68.9 117 39.3
Prupe.5G231500 Prunus persica HOM05D008822 ORTHO05D003990 1.0e-09 68.9 106 41.5
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 1.3e-09 68.6 88 40.9
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.2e-09 67.8 112 39.3
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 2.9e-09 67.4 250 29.6
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 5.0e-09 66.6 72 52.8
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 8.5e-09 65.9 145 34.5
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 1.1e-08 65.5 71 47.9
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 1.1e-08 65.5 71 47.9
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 1.1e-08 65.5 294 27.6
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 1.1e-08 65.5 237 30.8
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 1.9e-08 64.7 115 38.3
Glyma.11G216300 Glycine max HOM05D002447 ORTHO05D001298 2.5e-08 64.3 67 49.3
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 3.2e-08 63.9 50 58.0
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 4.2e-08 63.5 213 29.6
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 5.5e-08 63.2 54 55.6
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 5.5e-08 63.2 196 29.1
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 5.5e-08 63.2 181 29.8
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 5.5e-08 63.2 199 35.2
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 7.2e-08 62.8 70 48.6
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 7.2e-08 62.8 317 27.1
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 9.5e-08 62.4 59 50.8
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 1.2e-07 62.0 71 43.7
Lj4g0004392 Lotus japonicus HOM05D003305 ORTHO05D001298 1.2e-07 62.0 61 47.5
Aqoxy3G00110 Aquilegia oxysepala HOM05D003305 ORTHO05D001298 2.1e-07 61.2 114 34.2
GSVIVG01008411001 Vitis vinifera HOM05D003305 ORTHO05D001298 2.7e-07 60.8 105 39.0
FAN23G3122 Fragaria x ananassa HOM05D002447 ORTHO05D001298 3.6e-07 60.5 67 46.3
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 4.7e-07 60.1 60 50.0
RcHm_v2.0_Chr3g0493151 Rosa chinensis HOM05D002447 ORTHO05D001298 4.7e-07 60.1 67 46.3
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 4.7e-07 60.1 63 50.8
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 6.1e-07 59.7 237 30.8
arahy.Tifrunner.gnm1.ann1.UZQ5G1 Arachis hypogaea HOM05D000651 ORTHO05D003990 8.0e-07 59.3 144 31.2
Glyma.18G040200 Glycine max HOM05D002447 ORTHO05D001298 8.0e-07 59.3 67 44.8
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 8.0e-07 59.3 225 28.9
TPR.G24921 Trifolium pratense HOM05D002447 ORTHO05D001298 8.0e-07 59.3 66 45.5
Nn4g24189 Nelumbo nucifera HOM05D003305 ORTHO05D001298 1.0e-06 58.9 65 47.7
Thecc.03G053100 Theobroma cacao HOM05D003305 ORTHO05D001298 1.0e-06 58.9 61 45.9
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 1.4e-06 58.5 191 28.3
TAR622G0364 Trochodendron aralioides HOM05D003305 ORTHO05D001298 1.4e-06 58.5 77 41.6
TAR622G1365 Trochodendron aralioides HOM05D003305 ORTHO05D001298 1.4e-06 58.5 77 41.6
Cpa.g.sc116.54 Carica papaya HOM05D002447 ORTHO05D001298 1.8e-06 58.2 67 43.3
arahy.Tifrunner.gnm1.ann1.RIX96U Arachis hypogaea HOM05D002447 ORTHO05D001298 2.3e-06 57.8 66 43.9
Atru.chr1.1906 Acer truncatum HOM05D002447 ORTHO05D001298 3.0e-06 57.4 67 43.3
Potri.017G129400 Populus trichocarpa HOM05D002447 ORTHO05D001298 3.0e-06 57.4 67 43.3
Prupe.3G161100 Prunus persica HOM05D002447 ORTHO05D001298 3.0e-06 57.4 66 45.5
AUR62015594 Chenopodium quinoa HOM05D002447 ORTHO05D001298 4.0e-06 57.0 66 42.4
AUR62029305 Chenopodium quinoa HOM05D002447 ORTHO05D001298 4.0e-06 57.0 66 42.4
THA.LOC104821833 Tarenaya hassleriana HOM05D003305 ORTHO05D001298 4.0e-06 57.0 74 44.6
Nitab4.5_0001986g0050 Nicotiana tabacum HOM05D003305 ORTHO05D001298 5.2e-06 56.6 108 34.3
Nitab4.5_0004028g0030 Nicotiana tabacum HOM05D003305 ORTHO05D001298 6.8e-06 56.2 105 36.2
Os08g0428800 Oryza sativa ssp. japonica HOM05D002447 ORTHO05D001298 6.8e-06 56.2 67 44.8
arahy.Tifrunner.gnm1.ann1.F0QMSU Arachis hypogaea HOM05D000651 ORTHO05D003990 8.8e-06 55.8 90 44.4
arahy.Tifrunner.gnm1.ann1.UQR3KX Arachis hypogaea HOM05D000651 ORTHO05D003990 8.8e-06 55.8 65 43.1
FvH4_1g28760 Fragaria vesca HOM05D002447 ORTHO05D001298 8.8e-06 55.8 67 43.3
FAN19G0233 Fragaria x ananassa HOM05D002447 ORTHO05D001298 8.8e-06 55.8 67 43.3
Manes.02G076600 Manihot esculenta HOM05D002447 ORTHO05D001298 8.8e-06 55.8 67 43.3
TWI74G0932 Tripterygium wilfordii HOM05D002447 ORTHO05D001298 8.8e-06 55.8 107 36.4


User provided reference genes

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