Gene: AT5G08780
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G08780
- Transcript Identifier AT5G08780.1
- Gene Type Coding gene
- Location Chr5 : 2856782-2858810 : positive
Gene Family Information
- ID HOM05D008822
- #Genes/#Species 41/34
- Phylogenetic origin
- ID ORTHO05D003990
- #Genes/#Species 195/82
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G08780.1
- uniprot Q6AWW7
Descriptions
- Description winged-helix DNA-binding transcription factor family protein
- Computational description winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 303 Blast hits to 293 proteins in 77 species: Archae - 3; Bacteria - 18; Metazoa - 36; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IEA | Gene Ontology | nucleosome assembly | |
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0030261 | IBA | Gene Ontology | chromosome condensation | 1 |
| GO:0045910 | IBA | Gene Ontology | negative regulation of DNA recombination | 1 |
| GO:0031936 | IBA | Gene Ontology | negative regulation of chromatin silencing | 1 |
| GO:0016584 | IBA | Gene Ontology | nucleosome positioning | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003690 | IBA | Gene Ontology | double-stranded DNA binding | 1 |
| GO:0031492 | IBA | Gene Ontology | nucleosomal DNA binding | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | Gene Ontology | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005730 | IBA | Gene Ontology | nucleolus | 1 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |