Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1412 Fragaria x ananassa HOM05D000428 ORTHO05D011602 2.6e-46 188.3 93 100.0
FvH4_4g08830 Fragaria vesca HOM05D000428 ORTHO05D011602 2.6e-38 161.8 78 98.7
FAN01G1760 Fragaria x ananassa HOM05D000428 ORTHO05D011602 5.8e-30 134.0 77 87.0
FAN25G1027 Fragaria x ananassa HOM05D000428 ORTHO05D011602 1.7e-29 132.5 77 85.7
FAN20G1805 Fragaria x ananassa HOM05D000428 ORTHO05D011602 6.4e-29 130.6 77 84.4
FAN20G2507 Fragaria x ananassa HOM05D000428 ORTHO05D011602 8.3e-29 130.2 88 78.4
FAN18G2164 Fragaria x ananassa HOM05D000428 ORTHO05D011602 5.4e-28 127.5 82 78.0
FAN28G0921 Fragaria x ananassa HOM05D000428 ORTHO05D011602 9.2e-28 126.7 77 81.8
FAN23G0265 Fragaria x ananassa HOM05D000428 ORTHO05D011602 2.7e-27 125.2 77 83.1
FAN05G4675 Fragaria x ananassa HOM05D000428 ORTHO05D011602 1.7e-18 95.9 60 80.0
FAN05G5365 Fragaria x ananassa HOM05D000428 ORTHO05D011602 1.7e-18 95.9 60 80.0
FAN09G4613 Fragaria x ananassa HOM05D000428 ORTHO05D000582 1.2e-11 73.2 95 47.4
FAN09G3641 Fragaria x ananassa HOM05D000428 ORTHO05D011602 2.7e-11 72.0 37 91.9
FvH4_6g17300 Fragaria vesca HOM05D000428 ORTHO05D000582 4.6e-11 71.2 95 46.3
FAN02G1116 Fragaria x ananassa HOM05D000428 ORTHO05D000582 4.6e-11 71.2 95 46.3
FAN14G0770 Fragaria x ananassa HOM05D000428 ORTHO05D000582 6.0e-11 70.9 95 45.3
FAN05G0652 Fragaria x ananassa HOM05D000428 ORTHO05D000582 2.3e-10 68.9 95 44.2
FAN05G3216 Fragaria x ananassa HOM05D000428 ORTHO05D000582 2.3e-10 68.9 95 44.2
FAN16G1130 Fragaria x ananassa HOM05D021181 ORTHO05D011602 2.3e-10 68.9 32 96.9
MD14G1096300 Malus domestica HOM05D000428 ORTHO05D000582 2.3e-10 68.9 56 64.3
RcHm_v2.0_Chr3g0471421 Rosa chinensis HOM05D000428 ORTHO05D000582 8.7e-10 67.0 97 42.3
AL4G32840 Arabidopsis lyrata HOM05D000428 ORTHO05D000582 2.5e-09 65.5 94 41.5
Nitab4.5_0004281g0040 Nicotiana tabacum HOM05D000428 ORTHO05D000582 4.3e-09 64.7 95 41.1
arahy.Tifrunner.gnm1.ann1.KR97Y0 Arachis hypogaea HOM05D000428 ORTHO05D000582 5.6e-09 64.3 97 40.2
arahy.Tifrunner.gnm1.ann1.TXX6G9 Arachis hypogaea HOM05D000428 ORTHO05D000582 5.6e-09 64.3 97 40.2
MELO3C009412.2 Cucumis melo HOM05D000428 ORTHO05D000582 7.3e-09 63.9 95 41.1
CsaV3_3G036430 Cucumis sativus L. HOM05D000428 ORTHO05D000566 7.3e-09 63.9 95 41.1
Dinv35838 Davidia involucrata HOM05D000428 ORTHO05D000582 1.3e-08 63.2 97 41.2
Sed0021738 Sechium edule HOM05D000428 ORTHO05D000582 1.3e-08 63.2 100 39.0
ClCG10G019600 Citrullus lanatus HOM05D000428 ORTHO05D000582 1.6e-08 62.8 95 37.9
Nitab4.5_0006709g0050 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.6e-08 62.8 93 40.9
Medtr7g102730 Medicago truncatula HOM05D000428 ORTHO05D000582 2.1e-08 62.4 66 54.5
Ca_08941_v3 Cicer arietinum L. HOM05D000428 ORTHO05D000582 2.8e-08 62.0 66 54.5
MD12G1102400 Malus domestica HOM05D000428 ORTHO05D000582 2.8e-08 62.0 37 75.7
Nn2g13919 Nelumbo nucifera HOM05D000428 ORTHO05D000582 3.6e-08 61.6 92 39.1
Nn6g35117 Nelumbo nucifera HOM05D000428 ORTHO05D000582 3.6e-08 61.6 92 40.2
Psat3g038120 Pisum sativum HOM05D000428 ORTHO05D000582 3.6e-08 61.6 66 54.5
Prupe.7G122400 Prunus persica HOM05D000428 ORTHO05D000582 6.2e-08 60.8 65 50.8
Carub.0004s1848 Capsella rubella HOM05D000428 ORTHO05D000582 8.1e-08 60.5 91 40.7
Glyma.19G188700 Glycine max HOM05D000428 ORTHO05D000582 8.1e-08 60.5 39 69.2
Lj2C124T9 Lonicera japonica HOM05D000428 ORTHO05D000582 8.1e-08 60.5 41 70.7
Glyma.13G148200 Glycine max HOM05D000428 ORTHO05D000582 1.1e-07 60.1 41 73.2
Lj3A1009G50 Lonicera japonica HOM05D000428 ORTHO05D000582 1.1e-07 60.1 41 68.3
Rhsim03G0085400 Rhododendron simsii HOM05D000428 ORTHO05D000582 1.1e-07 60.1 95 38.9
TWI74G0991 Tripterygium wilfordii HOM05D000428 ORTHO05D000582 1.1e-07 60.1 38 73.7
Duzib093G1028 Durio zibethinus HOM05D000428 ORTHO05D000582 1.4e-07 59.7 40 70.0
Manes.08G017100 Manihot esculenta HOM05D000428 ORTHO05D000582 1.4e-07 59.7 94 38.3
Cpa.g.sc5.121 Carica papaya HOM05D000428 ORTHO05D000582 1.8e-07 59.3 40 70.0
Lj1g0016716 Lotus japonicus HOM05D000428 ORTHO05D000582 1.8e-07 59.3 41 68.3
Phvul.007G225700 Phaseolus vulgaris HOM05D000428 ORTHO05D000582 1.8e-07 59.3 41 68.3
GSVIVG01033724001 Vitis vinifera HOM05D000428 ORTHO05D000582 1.8e-07 59.3 95 38.9
Glyma.03G188500 Glycine max HOM05D000428 ORTHO05D000582 2.4e-07 58.9 41 68.3
VMungo1383G3559 Vigna mungo HOM05D000428 ORTHO05D000582 2.4e-07 58.9 48 60.4
Ciclev10011287m.g Citrus clementina HOM05D000428 ORTHO05D000582 3.1e-07 58.5 93 39.8
Thecc.05G076200 Theobroma cacao HOM05D000428 ORTHO05D000582 3.1e-07 58.5 40 70.0
CSS0027618 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D000582 4.0e-07 58.2 41 63.4
CAN.G766.1 Capsicum annuum HOM05D000428 ORTHO05D000582 4.0e-07 58.2 93 40.9
Gohir.A04G067900 Gossypium hirsutum HOM05D000428 ORTHO05D000582 4.0e-07 58.2 94 39.4
Gorai.009G410600 Gossypium raimondii HOM05D000428 ORTHO05D000582 4.0e-07 58.2 94 39.4
PSO339G2073 Papaver somniferum HOM05D000428 ORTHO05D000582 4.0e-07 58.2 41 65.9
vmacro07352 Vaccinium macrocarpon HOM05D000428 ORTHO05D000582 5.3e-07 57.8 39 69.2
CiPaw.09G005600 Carya illinoinensis HOM05D000428 ORTHO05D000582 6.9e-07 57.4 37 75.7
Phvul.001G183900 Phaseolus vulgaris HOM05D000428 ORTHO05D000582 6.9e-07 57.4 64 50.0
QL07p041287 Quercus lobata HOM05D000428 ORTHO05D000582 6.9e-07 57.4 41 65.9
Sc02g0001300 Simmondsia chinensis HOM05D000428 ORTHO05D000582 6.9e-07 57.4 94 39.4
VMungo0720G2409 Vigna mungo HOM05D000428 ORTHO05D000582 6.9e-07 57.4 41 63.4
Oeu023982.1 Olea europaea HOM05D000428 ORTHO05D000582 9.0e-07 57.0 93 36.6
PSO801G0199 Papaver somniferum HOM05D000428 ORTHO05D000582 9.0e-07 57.0 41 65.9
TWI53G1764 Tripterygium wilfordii HOM05D000428 ORTHO05D000582 9.0e-07 57.0 39 69.2
Actinidia32468 Actinidia chinensis HOM05D000428 ORTHO05D000582 1.2e-06 56.6 41 61.0
CSS0037486 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D000582 1.2e-06 56.6 41 61.0
Glyma.10G063700 Glycine max HOM05D000428 ORTHO05D000582 1.2e-06 56.6 41 68.3
Gohir.A11G322600 Gossypium hirsutum HOM05D000428 ORTHO05D000582 1.2e-06 56.6 94 39.4
Nitab4.5_0001979g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.2e-06 56.6 39 69.2
Gohir.D04G106500 Gossypium hirsutum HOM05D000428 ORTHO05D000582 1.5e-06 56.2 40 67.5
PSO063G4038 Papaver somniferum HOM05D000428 ORTHO05D000582 1.5e-06 56.2 37 73.0
PSO339G4509 Papaver somniferum HOM05D000428 ORTHO05D000582 1.5e-06 56.2 37 73.0
Psat5g026200 Pisum sativum HOM05D000428 ORTHO05D000582 1.5e-06 56.2 64 51.6
THA.LOC104827503 Tarenaya hassleriana HOM05D000428 ORTHO05D000582 1.5e-06 56.2 39 66.7
BcaC08g45758 Brassica carinata HOM05D000428 ORTHO05D000582 2.0e-06 55.8 62 48.4
C06p35390 Brassica napus HOM05D000428 ORTHO05D000582 2.0e-06 55.8 62 48.4
Duzib106G0654 Durio zibethinus HOM05D000428 ORTHO05D000582 2.0e-06 55.8 40 65.0
ECA248G0500 Erigeron canadensis HOM05D001588 ORTHO05D002975 2.0e-06 55.8 39 66.7
Lj3g0004078 Lotus japonicus HOM05D000428 ORTHO05D000582 2.0e-06 55.8 36 72.2
Lalb_Chr20g0112331 Lupinus albus HOM05D000428 ORTHO05D000582 2.0e-06 55.8 36 75.0
SGA_v2.0_scaffold35G14114 Striga asiatica HOM05D000428 ORTHO05D000582 2.0e-06 55.8 93 37.6
TAR273G0003 Trochodendron aralioides HOM05D000428 ORTHO05D000582 2.0e-06 55.8 92 38.0
TAR369G0376 Trochodendron aralioides HOM05D000428 ORTHO05D009270 2.0e-06 55.8 92 38.0
Atru.chr8.1696 Acer truncatum HOM05D000428 ORTHO05D000582 2.6e-06 55.5 41 63.4
Actinidia31306 Actinidia chinensis HOM05D000428 ORTHO05D000582 2.6e-06 55.5 41 58.5
MSTRG.26664 Avicennia marina HOM05D000428 ORTHO05D000582 2.6e-06 55.5 64 50.0
BcaB03g15616 Brassica carinata HOM05D000428 ORTHO05D000582 2.6e-06 55.5 66 45.5
CARHR130950 Cardamine hirsuta HOM05D000428 ORTHO05D000582 2.6e-06 55.5 92 35.9
Gohir.D11G341700 Gossypium hirsutum HOM05D000428 ORTHO05D000582 2.6e-06 55.5 94 38.3
Gorai.007G371700 Gossypium raimondii HOM05D000428 ORTHO05D000582 2.6e-06 55.5 94 38.3
BolC6t38644H Brassica oleracea HOM05D000428 ORTHO05D000582 4.4e-06 54.7 62 46.8
HanXRQChr01g0028191 Helianthus annuus HOM05D000428 ORTHO05D000582 4.4e-06 54.7 39 66.7
Migut.L01734 Erythranthe guttata HOM05D000428 ORTHO05D000582 5.8e-06 54.3 39 64.1
Hma1.2p1_1578F.1_g291840 Hydrangea macrophylla HOM05D000428 ORTHO05D000582 5.8e-06 54.3 39 66.7
Sopen10g035170 Solanum pennellii HOM05D000428 ORTHO05D000582 5.8e-06 54.3 39 66.7
PGSC0003DMG400008408 Solanum tuberosum HOM05D000428 ORTHO05D000582 5.8e-06 54.3 39 66.7
HPP92_019593 Vanilla planifolia HOM05D000428 ORTHO05D000582 5.8e-06 54.3 48 52.1
AT2G36660 Arabidopsis thaliana HOM05D000428 ORTHO05D000582 7.6e-06 53.9 93 36.6
Dinv37364 Davidia involucrata HOM05D000428 ORTHO05D000566 7.6e-06 53.9 97 37.1
Solyc10g085750.2 Solanum lycopersicum HOM05D000428 ORTHO05D000582 7.6e-06 53.9 39 66.7
DCAR_017645 Daucus carota HOM05D000428 ORTHO05D000582 9.9e-06 53.5 96 37.5
PGR004G0442 Punica granatum HOM05D000428 ORTHO05D000582 9.9e-06 53.5 54 51.9
SGA_v2.0_scaffold277G46713 Striga asiatica HOM05D000428 ORTHO05D000582 9.9e-06 53.5 37 64.9
TAR633G2340 Trochodendron aralioides HOM05D000428 ORTHO05D000582 9.9e-06 53.5 95 36.8


User provided reference genes

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