Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1695.6 831 100.0
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1661.7 831 98.4
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1634.4 870 93.7
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1614.7 848 94.3
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1562.7 829 92.2
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1461.4 825 85.7
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1439.1 823 84.0
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1429.1 823 83.4
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1357.0 826 79.7
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1350.1 823 78.6
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1340.9 825 78.3
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1332.8 827 78.2
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1327.8 825 78.4
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1322.8 825 77.6
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1318.9 813 78.4
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1318.1 825 77.0
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1316.6 825 77.0
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1311.2 826 77.0
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1310.8 826 75.9
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1305.8 825 76.1
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1304.7 847 75.1
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1304.3 825 77.1
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1303.9 825 76.5
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1298.1 827 74.7
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1298.1 825 75.5
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1294.6 827 76.5
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1293.5 826 75.9
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1289.6 830 75.4
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1287.7 825 74.4
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1285.8 820 75.4
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1284.2 825 75.2
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1281.5 826 75.2
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1278.5 826 74.1
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1277.3 827 75.1
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1276.5 826 74.6
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1276.2 820 75.1
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1275.8 825 74.7
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1272.3 826 74.5
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1272.3 825 73.1
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1271.1 826 74.3
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1270.4 820 74.3
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1260.0 821 75.0
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1258.8 826 73.8
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1257.3 821 74.4
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1256.9 820 74.1
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1256.5 823 73.3
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1256.5 826 72.4
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1256.1 826 74.3
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1255.7 826 72.8
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1255.0 826 74.1
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1254.6 828 74.4
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1253.8 825 72.2
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1252.7 830 73.6
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1252.3 826 72.4
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1251.9 825 73.1
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1250.7 826 73.8
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1250.3 823 73.1
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1247.3 825 72.4
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1247.3 825 72.0
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1246.9 797 75.0
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1246.5 825 72.4
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1245.7 824 72.5
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1245.0 825 72.2
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1244.6 825 72.2
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1243.0 826 72.0
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1242.6 838 73.0
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1242.6 828 73.8
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1240.7 826 73.4
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1236.5 824 72.7
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1235.7 826 71.2
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1234.6 826 72.3
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1233.4 826 71.5
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1232.2 825 71.8
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1229.2 822 73.1
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1228.0 825 71.4
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1226.1 825 71.3
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1223.8 825 71.2
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1220.3 862 70.3
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1214.5 771 75.5
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1214.1 825 70.7
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1208.0 827 69.9
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1206.8 825 70.8
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 825 70.7
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1201.4 827 70.1
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1197.6 819 70.6
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1187.2 825 71.3
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1166.0 820 70.5
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1162.1 830 68.7
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1157.9 819 70.0
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 0.0e+00 1154.8 830 69.8
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1150.6 837 67.4
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1128.6 829 67.3
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1119.8 809 67.9
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 0.0e+00 1114.0 717 73.8
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1092.4 837 65.1
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 2.9e-306 1055.0 841 65.8
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 9.6e-302 1040.0 828 62.7
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 9.0e-300 1033.5 833 62.5
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 1.9e-297 1025.8 814 65.5
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 3.3e-294 1015.0 826 60.8
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 3.2e-281 971.8 833 57.9
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.4e-260 902.5 837 56.5
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 2.3e-255 885.9 601 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 1.7e-245 853.2 715 60.0
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.9e-241 839.7 942 49.3
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 9.5e-241 837.4 613 65.9
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 8.6e-234 814.3 574 67.8
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 7.5e-230 801.2 583 66.2
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 9.8e-214 747.7 493 74.6
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 1.3e-213 747.3 461 78.5
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 2.7e-211 739.6 495 72.7
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 8.6e-210 734.6 951 45.3
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 5.6e-209 731.9 488 72.7
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.8e-175 620.5 817 43.7
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 1.3e-162 577.8 377 72.7
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 4.7e-147 526.2 637 48.0
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.7e-136 491.1 441 57.6
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.2e-126 458.4 425 56.0
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 1.7e-125 454.5 297 70.4
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.8e-125 453.4 423 60.3
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 1.6e-102 378.3 414 48.1
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 1.3e-101 375.2 225 82.7
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 9.2e-95 352.4 428 45.1
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 1.7e-93 348.2 233 75.1
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 4.7e-83 313.5 190 80.0
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 4.8e-75 287.0 311 53.4
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 3.1e-74 284.3 170 84.7
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.9e-64 251.1 182 64.8
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.1e-58 232.6 236 50.4
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 2.2e-56 224.9 123 87.8
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 1.9e-55 221.9 157 74.5
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 5.1e-53 213.8 351 40.7
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 2.8e-43 181.4 114 79.8
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 6.3e-43 180.3 131 73.3
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 4.7e-38 164.1 136 66.9
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 3.9e-37 161.0 148 61.5
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 9.7e-28 129.8 189 38.6
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 4.8e-27 127.5 87 71.3
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 1.8e-26 125.6 199 40.7
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.9e-23 115.5 69 82.6
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 7.2e-23 113.6 116 45.7
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 1.2e-22 112.8 287 31.7
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 6.1e-22 110.5 73 82.2
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 8.0e-22 110.2 73 65.8
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 4.0e-21 107.8 79 68.4
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.2e-20 106.3 79 67.1
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 1.5e-20 105.9 411 26.8
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 4.4e-20 104.4 388 27.8
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 4.4e-20 104.4 57 89.5
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 5.7e-20 104.0 65 86.2
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 5.7e-20 104.0 70 71.4
Zm00001eb265270 Zea mays HOM05D001528 ORTHO05D006464 3.1e-18 98.2 390 25.9
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.6e-17 95.9 279 29.0
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 1.3e-16 92.8 208 33.2
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 2.2e-16 92.0 331 26.6
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 6.5e-16 90.5 282 29.4
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 1.5e-15 89.4 57 84.2
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 3.2e-15 88.2 285 28.4
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 5.5e-15 87.4 321 25.5
Zm00001eb355050 Zea mays HOM05D001528 ORTHO05D006464 2.1e-14 85.5 315 25.7
Haze_27126 Corylus avellana HOM05D001528 ORTHO05D006464 3.6e-14 84.7 406 22.4
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 5.2e-13 80.9 253 28.9
MCO09G491 Micromonas commoda HOM05D001528 ORTHO05D022264 8.8e-13 80.1 270 25.6
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 1.2e-12 79.7 287 26.1
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 1.3e-11 76.3 53 66.0
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 4.1e-10 71.2 426 24.2
PRCOL_00002017 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 5.4e-10 70.9 285 26.3
PRCOL_00005382 Prasinoderma coloniale HOM05D001528 ORTHO05D022264 7.7e-09 67.0 245 26.9
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 3.8e-08 64.7 295 24.4


User provided reference genes

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